Gene detail

Detailed information of ENSAPQP00000033095.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4021559.1, chromobox homolog 7 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000037014

cTGATGAGAATGTTATGTTGAAAGCTGGTGACATGACAAAAGGAGTTCTTGAAAGGTTAACCAGTGAAACAGATACAGTTGGTTTGGTCAGTGAATTTCTTAAAACAgtgatacaacaaaatgaagttCGAAACACAGCAGTGGTATTTGCAGCAAACATTCTCAACCATCCTCAAACACAAGAGAAACTACAAGAGGTCATGAAAAAGACTTTGTATTCTATATTAAACAACGAAGAAACTAAGAATGTATTACTGGAATTTATTAAGAATTTAATTGAGGACCCGCAAACCAAGCAAACATGCAACTTGTTCCTTAAATCTTTGACAAAAGATCCAGATATTCAAAAAATGGTCTCTGAGTTTTTTAAGAGTGTATTAGCATCACCAACGTTTCAAATGGAAGCAATTACTCTGGGCAGAGAGGTGACACATAAAGTTGTCCATGACAAGGACATTCAAAAACAGACTGGTGACGCACTTTGGACTGCCATTAAGTATGGTGTTACACCATACTGGTTTCGtggtgaaaaataatttctgtTACCAACAATGTATGTTAGACAGTTTCAGAGAAATTTATTATCAAAGATTGTTGCTCAttacaatatttaaataatttaaatgtaaatataaCACATTATAAAGATTATTTATGCAGTAGTTAATTACTAATATTGTGTGTGATAAAGTTTTTGAGTTATCCAGAAGACCAGAACACTGGATAGTTACcatttcagggggggggggtctgCAGAGGAAAGTTGAGTATACCGGAATTTGTGACCAATACGGGAAGTGAGCTGTACCGGAACAAAGTCCCCGTAATATACGAGTAATGTCCCCATCACGTTTGACGACTTTTGTAATGAGATGTAAATTTTCTTCAGGCTAAACatcgtctttgttttcaatttgtaTTGATCTTTTCACTTTGAACACTCGTGTGTTTTAAAATGGACGAAGACGGTAGGCAAACAGGCATATATGCCGCTGAGAAAATCCTGAAGAAACGCAGGCGAGAGAACAAAGTTGAGTTTTTAATAAAGTGGAAAGGCTGGTCTGCTAAATATAATACATGGGAACCAAAAGAAAACGTGCTTGATCCTCGATTATTGCTTGCTTTTGAAGAAGCGCATGAGAAGAAGCGAAAACGTGGCTTTGCCAAAAGACCTCGTAGATCTGAGGAACCAGAAGAGGTTGATGATGAAGTAATGGAAGTTGAACAAGAAGAAGTAAACTCTTTAACTGGCGGTGAAACTGATAATGGTGGAGAAGAAAGCCAAGTCACACTACCTGATATACCTTCAAGTCATGTTGTTGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTCGCTGGACCAAGTCATGTTGTAGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTAGCTGGACCAAGTCATGTTGTCGCTGGTCCAAGTCATGTTGTCGCTGGACCAAGTCATGTTGTCGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTAGCTGGACCAAGTCATGTTGTTGCTGGACCAAGTCATGTTGTAGCTGGTCCAAGTCATGTTGTAGCTGGACCGAGTCATGTTGTAGCTCAATCAAGTCATGTAGCTGCTCAATCAAGTCATGTAGCTGCTCAATCAAGTCATACAACTGGAGCAAGTCTTACTGCCACATCAAGTCAGGCCATTCCTGCAAATAATGCATTTGCAAGTGGTGAAAATATTGATCAGAAGCAACATGATGCAGGCAAGCTACAAGACAGCGACACAGTTAATTCACCTGAAGTTCCGGTTGTTCCTGAAACAACAGATGTTGCTGAGACACCAAGTGAACCTGTGCAGGATTTGGAAACCGTAAAAGTTGAAAGTTTGGGAAACATCACAGAAAGAAGTTGTATCAGTTTGAAAGAACCCATTGAGGAAGCAGTGTCAGAAGAATTGCCAAAGGATATATTCGACAACTCAAGCGAAAATGAATCTGTTATTTCAGGCCCATCACAACCATCATCACATATTGAGGAAAAGTCTGAGACTAACCCAATCCCACTGCCCACCCCTGATCTTATTCCTGATCCCGCCTCCCAATCCACACTACCAGTGGATCATAGAGCACCCCCTGTTACTGCACCCACCAATCATTCTACCTCTCATGTGGACCATC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P60889	Chromobox protein homolog 7 OS=Rattus norvegicus OX=10116 GN=Cbx7 PE=2 SV=1
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1
O95931	Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004139 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385 all species →	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF21300 all species →	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953 all species →	Domain	Chromo/chromo shadow domain	Interproscan
IPR011049 all species →	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR023780 all species →	Domain	Chromo domain	Interproscan
IPR016197 all species →	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR048518 all species →	Repeat	Ice-binding protein, beta roll	Interproscan
IPR043531 all species →	Family	E3 SUMO-protein ligase CBX4	Interproscan
IPR023779 all species →	Conserved_site	Chromo domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46727 all species →	E3 SUMO-PROTEIN LIGASE CBX4	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016925 all species →	Biological Process	protein sumoylation	Interproscan
GO:0032183 all species →	Molecular Function	SUMO binding	Interproscan
GO:0035102 all species →	Cellular Component	PRC1 complex	Interproscan
GO:0045892 all species →	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0061665 all species →	Molecular Function	SUMO ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000033095.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.