Gene detail

Detailed information of ENSAPQP00000033095.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB4021559.1, chromobox homolog 7 [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAPQT00000037014

cTGATGAGAATGTTATGTTGAAAGCTGGTGACATGACAAAAGGAGTTCTTGAAAGGTTAACCAGTGAAACAGATACAGTTGGTTTGGTCAGTGAATTTCTTAAAACAgtgatacaacaaaatgaagttCGAAACACAGCAGTGGTATTTGCAGCAAACATTCTCAACCATCCTCAAACACAAGAGAAACTACAAGAGGTCATGAAAAAGACTTTGTATTCTATATTAAACAACGAAGAAACTAAGAATGTATTACTGGAATTTATTAAGAATTTAATTGAGGACCCGCAAACCAAGCAAACATGCAACTTGTTCCTTAAATCTTTGACAAAAGATCCAGATATTCAAAAAATGGTCTCTGAGTTTTTTAAGAGTGTATTAGCATCACCAACGTTTCAAATGGAAGCAATTACTCTGGGCAGAGAGGTGACACATAAAGTTGTCCATGACAAGGACATTCAAAAACAGACTGGTGACGCACTTTGGACTGCCATTAAGTATGGTGTTACACCATACTGGTTTCGtggtgaaaaataatttctgtTACCAACAATGTATGTTAGACAGTTTCAGAGAAATTTATTATCAAAGATTGTTGCTCAttacaatatttaaataatttaaatgtaaatataaCACATTATAAAGATTATTTATGCAGTAGTTAATTACTAATATTGTGTGTGATAAAGTTTTTGAGTTATCCAGAAGACCAGAACACTGGATAGTTACcatttcagggggggggggtctgCAGAGGAAAGTTGAGTATACCGGAATTTGTGACCAATACGGGAAGTGAGCTGTACCGGAACAAAGTCCCCGTAATATACGAGTAATGTCCCCATCACGTTTGACGACTTTTGTAATGAGATGTAAATTTTCTTCAGGCTAAACatcgtctttgttttcaatttgtaTTGATCTTTTCACTTTGAACACTCGTGTGTTTTAAAATGGACGAAGACGGTAGGCAAACAGGCATATATGCCGCTGAGAAAATCCTGAAGAAACGCAGGCGAGAGAACAAAGTTGAGTTTTTAATAAAGTGGAAAGGCTGGTCTGCTAAATATAATACATGGGAACCAAAAGAAAACGTGCTTGATCCTCGATTATTGCTTGCTTTTGAAGAAGCGCATGAGAAGAAGCGAAAACGTGGCTTTGCCAAAAGACCTCGTAGATCTGAGGAACCAGAAGAGGTTGATGATGAAGTAATGGAAGTTGAACAAGAAGAAGTAAACTCTTTAACTGGCGGTGAAACTGATAATGGTGGAGAAGAAAGCCAAGTCACACTACCTGATATACCTTCAAGTCATGTTGTTGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTCGCTGGACCAAGTCATGTTGTAGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTAGCTGGACCAAGTCATGTTGTCGCTGGTCCAAGTCATGTTGTCGCTGGACCAAGTCATGTTGTCGCTGGACCAAGTCATGTTGTCGCTGGTCCGAGTCATGTTGTAGCTGGACCAAGTCATGTTGTTGCTGGACCAAGTCATGTTGTAGCTGGTCCAAGTCATGTTGTAGCTGGACCGAGTCATGTTGTAGCTCAATCAAGTCATGTAGCTGCTCAATCAAGTCATGTAGCTGCTCAATCAAGTCATACAACTGGAGCAAGTCTTACTGCCACATCAAGTCAGGCCATTCCTGCAAATAATGCATTTGCAAGTGGTGAAAATATTGATCAGAAGCAACATGATGCAGGCAAGCTACAAGACAGCGACACAGTTAATTCACCTGAAGTTCCGGTTGTTCCTGAAACAACAGATGTTGCTGAGACACCAAGTGAACCTGTGCAGGATTTGGAAACCGTAAAAGTTGAAAGTTTGGGAAACATCACAGAAAGAAGTTGTATCAGTTTGAAAGAACCCATTGAGGAAGCAGTGTCAGAAGAATTGCCAAAGGATATATTCGACAACTCAAGCGAAAATGAATCTGTTATTTCAGGCCCATCACAACCATCATCACATATTGAGGAAAAGTCTGAGACTAACCCAATCCCACTGCCCACCCCTGATCTTATTCCTGATCCCGCCTCCCAATCCACACTACCAGTGGATCATAGAGCACCCCCTGTTACTGCACCCACCAATCATTCTACCTCTCATGTGGACCATC

Protein

Uniprot

Uniprot term	Description
P60889	Chromobox protein homolog 7 OS=Rattus norvegicus OX=10116 GN=Cbx7 PE=2 SV=1
Q8VDS3	Chromobox protein homolog 7 OS=Mus musculus OX=10090 GN=Cbx7 PE=1 SV=1
O95931	Chromobox protein homolog 7 OS=Homo sapiens OX=9606 GN=CBX7 PE=1 SV=1

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00385	Chromo	Chromo (CHRromatin Organisation MOdifier) domain	Domain	Interproscan
PF21300	LbR_Ice_bind	Grass antifreeze beta roll	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000953	Domain	Chromo/chromo shadow domain	Interproscan
IPR011049	Homologous_superfamily	Serralysin-like metalloprotease, C-terminal	Interproscan
IPR023780	Domain	Chromo domain	Interproscan
IPR016197	Homologous_superfamily	Chromo-like domain superfamily	Interproscan
IPR048518	Repeat	Ice-binding protein, beta roll	Interproscan
IPR043531	Family	E3 SUMO-protein ligase CBX4	Interproscan
IPR023779	Conserved_site	Chromo domain, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46727	E3 SUMO-PROTEIN LIGASE CBX4	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000122	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0016925	Biological Process	protein sumoylation	Interproscan
GO:0032183	Molecular Function	SUMO binding	Interproscan
GO:0035102	Cellular Component	PRC1 complex	Interproscan
GO:0045892	Biological Process	negative regulation of DNA-templated transcription	Interproscan
GO:0061665	Molecular Function	SUMO ligase activity	Interproscan