Gene detail

Detailed information of ENSAPQP00000033472.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4039606.1, DNA dC-, partial [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000037434

TTACAGGTTCAGAATTTgtcatttgaaaataattctgcGCCTTTAATCAAAAAAGAAAGTAAAACTAAAGGATTTGCAAGCGAAATATAAGACTTGTTTATTTATAGCATTGAGAGAATAGTTAAATTTCTTGGTTATAGTTATTCATGTAGAAAATTGTTGCCCATTTTAAATGCTCGGTAATAATATATTCTAACAAACACAAGATAACACATGCTGATGACGCCACACGCGCATTCTGTATGAACGTGTATAACGCTTAGATCTGTAGTTATAAAAACTGGTTACTATTTGTACATATGGCGCAAGCAACGAAAATTATTGGCACCAGAGGCATCGGGAAGTTGATCACTAAACTCCCATGTTACGAGCCAGGTTGGCCGATAGAAAAAGGATCCGTAATGTTgttgaataaaattaaaatgttcGATTCGAAATTAAGGAACGAGGGCTTACCTAACACCTTTTTTACACATCGAAAGGGAAACATTCACCGAGAAAGAGACTTTCTTAAAGAACTCACTGGTAAAATTCAATGTCGAAAACACCAAgtagaaaaaataaaagccCACAACTACTCGACTTATGCTAAATGCGCAGATGCTCTTCTCATAATCAAAGACGCAAGAAGAGACGGAGACATTGGATTTTCTCTGAAAATagaatttgcaaacttttatTGTCATTGGGAAAAATGGAACagaaacagtttgaaaatgttggtGAAAAACGGTGTAGCTTTGGGGTCGATTCAAGGTGAGGATGACTGGAAAGCATTTTTAAATGATGAGAGATTCGTGGAATTAACAGACCGTGAGAAACCGAAACTTCTCGAAAGTGCAGAATTAACAGGAAGAATGAACAACGAAAAGCAAGGCATAAAAATCTTTAACCACATTGGACTTGGAAATACATTCTTACTGTTAGGTGATAATCCTGCATATCCTTATGATGATGTGACTGATGGCGATGGTGACACGAAAGATGTAAAGGGTGAAAATGGTAGTGATGGTAAAGATATTGGTGTTAAAGATGGTGGTGACGTTAAAGTTGGTGGTGGTGTTAAAGTTGGGGGTGATGGTAAAGATGGTAGTGGTGTTAAAGTTGGAGGTGATGGTAAAGATGGTAGTCGTGTTAAAgttgatggtggtgataaagATAGCGGTGATCGTCAAAATGGTGGTCATGGCGAAGATGATGGAGATGAAGATCGTGGAGCACGGATTTTGACAGCAAGTCCGTCAAAGGGAGCTGACAAGATCGGAAAAGAAGACGTTGTGAAATTCATCATTACACACAAGTACGGTGAAAAACCTTGGGAATGGCCAAGACGTAAAAACGCCACGATAGTGTTGAGCAGCGTCAACATACACTACACATTGTCAAACTCTTCTAAAACCACCAACGAACATCATACACTATCTAGGAATAATGTTTACAAAAATCGAAGCCTACATGCGGAAGTAAAGTTTCTTCGCAAACTTAGAAAAGCAATTCATAAACTATCACAAGACAAGAAAGTCAGCCTCGTCGACATACATGCCGATCTTGTTCAGAACTACTCTCCTTGCAATAGTTACCGCCTTGGTGGTAAATCAGGATGTGCAGATGATTTTATCAAATTCAAGGAGGACATGGAAAGGAATGGCAGTAGCTTTTCTTTGAAGATAAAGTTTGCGAACTTTTATAAACATACAGATGAATCAAACAGAGCAGGGTTACGGAAACTGGTAGAGAACGGTGTTAAATTAGAGTTATTTCAAGGCGAAGAAGATTGGAAAGTGTTcttaaacaataaaacaaaaaaattaactaaagATGATCTTAGAGAATTACTGGAAAGGGTGACTTCGGAAGAAAGAACGAAAAGAGAAATGAATGACGTGGAAATTCTTCGCAATATAATATCTGGGGCTCCAGGTAAGCAAaggaaacaaagcaatattctcttatagtaaaaaaatatttatttgcattaatAGGCGGCTATATTTGAGAAAGTCGGCCATTAACCTCAATGTCTCATTGTGGTTTTGTGTCTCACTGAACGGCTTAATGCGGGATTACCGATCTAGTATACAGAGGCATGTTGACTGCCAAGGTATGTGCAGATACCGAACCCCCAAACAAagttatcatgattatgttaaCAATTCAAAGGTGCTTTTCTCCAATGAAACTAAATAATACATCTATCACTTATTACAGAGGCGGAGGAAAAACATGCTGTTGCGGTGAAAGATCTTCCAGAAAAAATCAGAAAGTCTTCCACGGAATCCACACGCAATTTCAGCAGAACTGATAAAAGAGCTTCGAAAAAACGAAGAGTGTTGAAATCCAAGAAACGTGATGTCGATGATGAAGGCGATAGACGATAATtacttatttttattttatttatttatttattcattttacttatttatttttatttatttatttatttattgttttatttattattatcatataTAGAGAACAAAATTACTTGAATATGACTGGCTAATAAGGaaagcattttttttattaggGTAAAATTACTTATACCTGATTGGCGaggtgggaggggggggggcaagccTTTACGATTTTCCGACAACATTACATCGTTTTGCTAGGATTGAGTTGCTTGGATCGTTTTGATCCTTTGAATTGATATTATTCAATTACAAGAGAGGCACACAATTAAGGCCAGCGCCTTAAATACTTGCCACTGAGATTAACACGTGGAAAAATAGCTAATACGCAAACCACTGGTGCTCGTAAAGTTGTGGTGCGAACCGAACTATATTAATTGGTTTTCCTGAAGATATCCGAGACACTCTCGTTCGAATAAACACAGGTATTGTATAATCTGACGTTATAGACATATTTTATACAGCAACGAATTTGCAATAGGATACGACAACGACTCATTTAATAGCCACTGACCACTCAGGCATTACATTATCACG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010020 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF18778 all species →	NAD1	Novel AID APOBEC clade 1	Family	Interproscan
PF18750 all species →	SNAD4	Secreted Novel AID/APOBEC-like Deaminase 4	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050610 all species →	Family	APOBEC Cytidine Deaminase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13857 all species →	MRNA EDITING ENZYME	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0004126 all species →	Molecular Function	cytidine deaminase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016554 all species →	Biological Process	cytidine to uridine editing	Interproscan
GO:0080111 all species →	Biological Process	obsolete DNA demethylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000033472.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.