Gene detail

Detailed information of ENSAPQP00000033486.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977305.1, importin subunit alpha-7 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000037448

CCCGACCACATTGTTACGGAAGGGAACTGGCGATTTAATTTTCCCTTTTCTGTATTGCATTGCAgaagaatttgaaaagatACTGGGAATTCTTTCTCAAATATGTCTACTGTAAATCAAAACTCTCGATTGAAATCTTACAAAAATAAAGGTCTTGACGCAGACGAACTGAGGCGACGACGCGAAGAAGAAGGCGTACAACTTCGCAAAGCGAAACGAGAAGAACAAGTTTTCAAACGGAGAAATGTGGAAACGCAGGATTTTGAAGCGACGCCAGAACTTGAAGCATTGTTGAATGATCCAGCGCGGAGTGCTTTGGCTAATTCTATGATTCAGAAATTATACACAGAGGATGAAGGAGAACAATTGCTTGTAACGCAACAATTAAGACGACTTCTTTCAAAGGAACCAAACCCGCCCATTGAAGAAGTGATCAACAGTGGAGTAATTCCGAGACTCATTGAGTTTTTACAAAGAGAAAACAACCATGTTCTTCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCATCTGGCACTTCATTACAAACAAGAAAAGTTGTTGAAGCTGGAGCTGTACCAATCTTTATTGCATTGCTGTCATCACCACATGAAGATGTGCAAGAACAGGCTGTCTGGGCTCTGGGTAATGTTGCTGGTGATAGTCCAGGGTGTCGAGATTTTGTCATTGCAAGTGGCATGTTGGAGCCATTACTCAGAATATTAACAACATCTGGAAAATTGAGTATGATGAAGAATGCAGTTTGGGCATTATCGAATTTATGTCGTGGAAAAAACCCACCACCAGACTTCACAAAGGTTTCTGTGTGTTTGCCTGTTCTTGCAAGGCTTTTATTCAGTGGGGAACCATCAACAATGTACCAGTCAGATCCAGATATCTTGGCTGATGCATGTTGGGCATTGTCCTATCTTTCTGATGGTCCAAATGAGAAGATCCAAGCAGTTATAGCGTCTGGCGTTTGTCGAAGATTAGTCGAACTATTAATGCATCCTTTCAATAGTGTTGTGTCTGCAAGCCTCAGAGCTGTTGGAAATATTGTTACTGGTGATGATGTTCAGACACAGGTCATGTTAAACTGTAGTGCACTCCCAAGCTTACTTCATTTATTGAGCTCATCAAGAGAGACCATTAGAAAAGAAGCCTGTTGGACTTTGTCTAACATCACTGCTGGTAACAGGGCACAGATACAGATGGTGATTGATGCAAACATAATTCCAATGCTGATAGAAATACTTTGTAAAGCAGAATTCAAAACAAGAAAGGAAGCAGCATGGGCAATTACAAATGCAACATCTGGAGGGACCCCAGAACAAATTAGATATCTTGTTGATCAGGGCTGTGTTCCTCCATTATGTGATCTCCTCACAGTTATGGATACAAAAATAATTCGTGTTGCACTTAACGGTTTggaaaatattcttaaaatTGGTGACATGGATGCTAAACAAAGTGGAGAAACAAATAAATATGCTTTATTAATTGAAGAAAGCTATGGTGAGTTGAATTTGGTATATCTCTCAACACCCTTCAATGTAAGTTATGTTCTTCTTTCATGCCTCAACATGAACTCTCTTTGCTCAGGTCTGGATAAAATTGAATTCCTTCAAAGTCATGAAAATGAGGATATCTATAAGAAgacgtttgaaatcttagAGAATTACTTCAACGCTGAAGATGAGGATGAAAAGCTGGCACCCCAGGCCACCACTGATGAAGGACAATTTCAATTTGGACAAAATGTTGATCTACCTCAGGAAGGCTTCCAATTTTGATGGTGCACGATAAGAGATCAAAGCGTGACAGGTGACGGTAAGGCTGAGAGATTGAGTGAGTAAGAGAAGTAATGTAAATCCCCCTGAAAGTGGAAGAGCCCCCATAATTGAGAGTTGCCCTGAATGCGAAAGACATCAGAATTTGGGAGAGTTAGTGAGCACTTTGAATATTTAAGTGAATCCCCCGAATGAGAAAGTGACAGAGCAAGTGAGCCCTGAGAAGTGAAGCTCTTTTAGCCCCTGAAAGTGGAAGTCCCCTCTGAATGTGAAAGAGTTGTTTGAAAGTCTGCAAAGTATATTGTCACTATAATTTAAGATCTTAGTAAACATTTGATTTTGCAAGCTGTGTAAATAGGAAGGGTAAAAAATGCCTAAAATTGGGTGaagaagaaacatttcaaaagATGTAGATTTATACTGAAGGAAAAGTTAATGAAATTATTAGTGATGTGACACAGGCGTGTGATTTCAAATGTTATACTTTCTTTTaaacagatatatatatatatatatatatatacacaagtCCCTATTTTTACAACTCAACTTGTtatcttgattttttcatggTATTCGTGTGGATGACAAAACCTTGCTACCCTGAAAAGGAGACATTCTTTTGAAGAGGTAATGAAAAACTTCTCTACTTCTTTattatctttcttttcataTTACCTGTTTCTCAGCTTCTTCCATTATTCCGTCAATATAAACCAGTTGGTACTGCTTCGATTTCAATTGTTTTGCAGTCTTTCTTAGCATGTTGAAGCCAGCATTTGGTTTGCTTTCGTTTCCAAATAATTGTTGCATTTGTTTTGGTGAGTGAGATGGATCAAAGAGGATTAGatgttgtgtttttgttttggtgTAACGTTCTTCAAATCCAACAACCAAGCGACTATGACCTGCAAGTTAAAAACTCGCACATTTCTTTTGTGAAAATCTGCCATGCtaataatttctattttacCACAATGAGGTATTGGACCTACCTTGATG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9SLX0	Importin subunit alpha-1b OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0155601 PE=1 SV=2
Q96321	Importin subunit alpha-1 OS=Arabidopsis thaliana OX=3702 GN=IMPA1 PE=1 SV=2
O15131	Importin subunit alpha-6 OS=Homo sapiens OX=9606 GN=KPNA5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001150 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16186 all species →	Arm_3	Atypical Arm repeat	Repeat	Interproscan
PF01749 all species →	IBB	Importin beta binding domain	Repeat	Interproscan
PF00514 all species →	Arm	Armadillo/beta-catenin-like repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan
IPR036975 all species →	Homologous_superfamily	Importin-alpha, importin-beta-binding domain superfamily	Interproscan
IPR032413 all species →	Repeat	Atypical Arm repeat	Interproscan
IPR002652 all species →	Domain	Importin-alpha, importin-beta-binding domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR024931 all species →	Family	Importin subunit alpha	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23316 all species →	IMPORTIN ALPHA	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005654 all species →	Cellular Component	nucleoplasm	Interproscan
GO:0006607 all species →	Biological Process	NLS-bearing protein import into nucleus	Interproscan
GO:0008139 all species →	Molecular Function	nuclear localization sequence binding	Interproscan
GO:0061608 all species →	Molecular Function	nuclear import signal receptor activity	Interproscan
GO:0006606 all species →	Biological Process	protein import into nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K15042	KPNA5_6; importin subunit alpha-6/7	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.