Gene detail

Detailed information of ENSAPQP00000033504.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028398652.1, endoribonuclease Dicer-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000037466

ATGGAAAGTCTGGAACAAGATGAGTGTTTAAGAACCGTTGTTTCGACTAGTAGCGAAAAGTTAGGCACTAAAATGCTGCATCAGCTGAACGAATTTCGTCAAGATGGAACACTTTGCGACGCGAAATTGCGATTAGAAGGAAAAGAATTCACCGTCCATAAAGTGGTCTTATCATCAAGCTGTCCGTACTTTCGAACTCTTTTTACAGCGAACATGAAAGAACGAAAGCAAACCGTAATAGATCTGAAATGTCCCATTGATTTAGCTGGACGTATGGATGATTTTCTTACATTTTTATACACAACTAAAGTACAATTAACAGATGAGAATGTTGAAGGGTTGATTGTGGCCGCTGATTATTTCAATGTGGCAGAATTGAAAGAGCTAGGGTGTAGATTTCTTCAACAAAATGTAAATTTGTCGAACGGGATTGCGTTGCATGGTTTTGCTGGTCGGTATCATTGCGAACCTTTGCGCGAAATGACTCGAGATTTTTTAGTTGAGAATTTTACTGCCATCTCTCAGACTGAGGACTACTTATTAACTGACCCTGTGCAATTACTAGAAATTGTTTCAAGTGACGAGCTGGTTTTGTCTTCAGAAGAGGAACTGTACGAAGGCATTTTAAGATGGGTTAGGCATGACTTAACGAATCGGACAGGATTTTTCCCTGAGCTTTTCTCTAAGGTTCGGCTTCAAGATGTTGGCAGGACGTACCTTGCTGAGACTATTGCCAATGAAAAGCTTGTTACCAATGATCCAGTTTGTTCTGATCTTTTAATGAGGACCATACTGGAGTGCTATGTTACCAAGGATGTAAGCAATGCAACACCTTCTCGATTTCATGAGTGTGTATTTGTAAATGGTGGACGAGAGCCCACAGGAGCTACTGCTTCTTCGTATATATTTGTCCCTGCTCTCAACACTTGGTTCAAGATTCCTTCCATGAGCACAGTTCGGTACAGTCATGGCATTGCCGCTATTGGAGATGATGTCTTTGTCCTGGGAGGGTATTCCAAGAATGGATTCACAGCCGAGGTGGAAAAGTTCAATGTGAAATCAAGAAAATGGTCGAGGGGCCAAGCCTTACCAACCCCGATGAAAGGAATGGCTGTTACACGATACGACCCTCAAACCGAAAGATGGGAAGTGAAAGCCTCTCTACATGTTTCACGAAGTGGTGCAAGTCTTATCAGTGTTGGTAATTTCCTGTATGCCATTGGTGGAAAGGCAAGTGATAACCAGATGCTATCCTCCATGGAGAGATATTCCATCACTGATGATACCTGGGAAAGAATGTCGGAGATGTCGCACAAGAGGGCTTATGGTGTTGCAGCGTCGGTTGCTAATGGCAACATTCTTGTGGTTGGTGGTATCAACGAAGTTGGTGAAGTCGACACAATTGATCATGTGATGTACAATCCCACGGCTGGTGTCTGGTTCCCTGTTGCCGATCTTAGTGTCCCAAGAGCCTTTGCTGGCGTAGCTGTTCATGGTGAGAAGGTCTATGTGTTTGGTGGTGAGGGAACGGGTACGAGATACCACAACACCGTGGAATGCTATGATTGTCTAGGAATGCCTATTCTTGCAATAAAAAGACCTCAACAAGAAGTAGAATTGTTTAATTTTGCTCTCCATAATGATTGTGTGTTGGTTGTGTCTGAACAGACGTCCAAATGCTTCATTTGTTATCAAATAATCAatgaatttttgcaaaatgaaaTTTTAGACACAAATCCACTGATTGAAATTCTCAGTCAGTTGTTGCCAAGAAAACCAGTTGTGTTTTCTGGTCCTAATGATGCAGCATTGTTGTCagatgaagaaaatgttttgctcACAACAACCAGCAATTTTAATCGATGTTTAACGAAAGGATATATTAGTCCTAATGAAATATCTGTCATTATATTTCTAACCACTTCGAATACTGACACTGGCCATTCTACAGTTCTCAAGtcattttccaagaaaaatgCAGAACAAAGAATTATTGGACTAGTGGAATTAGGTCTGCAAGATGTCCACAATGCATCTGACCTAAAAAGTCAACTGGATGTTTTGGAATCACTATATGATATGCCTGTTTTTATGTCAAAAGATCTTTTAGCTATGAATGCTTATGGTGAAGAAATTGCAGTGGAAACATTTCCATATAGTCCGAAGAACCTAAATCCGATTGAAAGGAATATTTGGAAACATTTAAATGATTTATCAGACTTTCTTCAAGATACGAATCTAGCTACGGTCTCTGAATCCATTTCCAAATTAAGAGCAGTTGTTTTGTGGGCAGCTGAAATTTTAACAACATTTGGTTTATGGAGTTTCAGTCTAATGCaggaaaacattcaaaacacGTTATCACAAATGTTAAAAAAGGAGAATAACCTGTTTGTGGTACTTGCCATTCAAACATGCAAAACACAGTTTGATTTTCTTCAAAAGCTCGTTGACAATCAGCCCAAAACTCAATCTCTCCATTCATGTCTGATGGATGAAATGTTAGAGAAACTGGTGCCATATCAAGTCTTAGGCAAAAGTGAACAAGATATCAATGAGCATGAAATTGCTGTAAATTTACCACCGAATGGGCACGTCTTGTGTGAAAATGTTGTCCAAGCATCTTTGAACAAACAATCGATAGGGAACAACACATCTTTCAAGGGACCTGAAGTTGTGAAGAAACAAATACAGAAACTAAAAGATAAATCTCGGTTTAACTGCATTGTTGTAACAAGGTCTAATGCCCTCGCAAAAATGTTAAGTAAACTCATTAATTCAATGTCAGCTCGCAATGCAAAGTACAGTTTTATAAAATGTGGATGTGTGGTTCAGGCGAAAAACGACTGCACTGAAGATGAGGAACGAACTGAGAGTGTTTTGCAAGCTGTTCGTCAAGGCATGGTGAATGTTATTGTCACAACATCCAACCAATTTGCTGATCTTTTCCTAACTACTTTTAATGTGCTCATCTATTTTGGTATCCCATCGAGCTATGGAGATTTTTACTGGATTAAGAACAAGGTTAAAGGATTCGCACCAAAATTGATGTTTGTGTTCAATTCTGCTCATTCATCAAAAATGGAATGTAATTTACAGGTATTTAGGGatattgaatcagaaattgCAGAAAGAGTATCAGATTATATTACTCCTGAAAATAAAGAGAAATGGCTGAGTCGCCTCTCAGAAGAACCCTGTAATTACACACCATTTGGAGACAACGGTCCTTCTGTCACGATGGAGTCGAGTATCTATTTAATTAACCGGTtggttttgttgtgttttttttcattgatTGACTATTccattcattcatttcttttttCCCCAGTGCAGGCGGATAAAGGTAATAAAGAAGACATGGAAGTAGGAAGGTTAAAATCTCGAATGTTAGCATGTTTAGAATGTGTCAAGGTACTGCACAGGTGTGGGAAAATGGACAATGATCTCGATCTCATTGAAGAGTTCTACGTTGATGCCAACAGTGAGAATTTACAAAACTGTGAACTTGAAGAAGGCAAAGGAAGAGCAGGAACGAATAAACGAAAGAGGGTGTATGAAATAAAGGTGCCGTCCTTTTTTGACGACAACATGCCCAGAGCAAATGAGACATGTTTTCTCTACAAGATCACATTTGAAGATCCCACAATTTATAAGCATTCCAGATCAGGGTCTTTGCAAAGTTTGACGGAGCCTGAGTTGGAACTGGGCATTCTTTCGAGGAAGAAACTACCAGAGgtgagaattttttttaaaagggTGAACCTTCTTTCctcatttgaatatctgcAGTTACCACCATGGAATCTTCAACGTATCAGGATGTTTCATTGTTACGTTTTTAAAGAACTGTACAAACTGAACAACCAAGTGACTACGTTATCCGAAAGTGTCGGTTACCTGGCTGTACCTTTGCTTCCTAAAACACCTTCAAGAACGACACTTTCTGGCGTTGGCTGTGAGATTCATTACGACTTTCTACAAGAGTTGTCGATGTTTTTCCAGGCCAGTGCGGATCCTAATATGAAGTTGAATACCAACACACCACGCAAGGATTTTAACTTCTTTCAGAGTAAAATTGTACGAAGAATAAACGAATCAGCGAATCAAACTCATTACACGAGATATTTCGTGGCAAAAGTTTGTCAAGATTTGTCACCATTATCGCCATTTCCTGACCAAGATGTtgccgcaacctttgcagacTACTATGAGAATCGTTATGGTATTCAAGTCAATCGTCAACAGCCTTTACTCTTGGTACAACATGTTCCCACACAAGTGAATTTTGTTACCCCGCGACTTAGAAATCAGACGAGTGAGGACCTGAGTCTAAAAGTGTCCAAAACGGAAATACATTTGATTCCAGAGTTGTGTTCTGTCCTGCCATTGTCCGCATCGGCTTGGTCTTTGGCTCGCTATCTTCCCGCTGTTGTCTACCGGCTTGAAGCAATATTGCGAGCACAAGAAATGAAGTTAAAGTTGGGTGCTGTTGGCCATGCCAATGGTCTCGGTACTGATCATCATGGTGTTGGTGATGGTAGTGATTGTGTTGGtaatggtgatggtgatgatggtgttggtaatggtgatgatggtgttgGTAATGGTGATGGTAGTGATGATGCTTCTGGTAATGAGGGTGCTGTTGGCCATGCCAATGGTCTTGGTACTGATCATCATGGTGTTGGTGATGGTAGTGATTGTGTTGGTAATGGTGATGGTAGTGATTGTGTTGGTAATGGTGATGGTTTAAGCGTGTCACTGATGCTGCACGCTCTCACTGCAAAATCTGTTGGTCAACAGTTTCATTCTGAACAACTAGAATTATTCGGTGACTCTTTTCTAAAACTCGAAGTGAGCTTAGAACTCTTCCTGACTGACCCAGAGAAAGATGAATGGGTTCTATCAATTTACCGAAAGCGTCTTGTCTCAAACGACATGCTCTCCACCCAAGGACGTCGTCTAGGAATACCCGAGTACATCACAATCACACTCCCAGATTTAACCAACACCTCGATCCCCCCTGGTTTTATTCTTGAGACATCTCAGGGTGTGAAGAAGGCGTCCCTGAATCTGTACACACACCAAGTGCTCGGGGATAAACACGTCGCGAATTGCGTAGAAGCTTTGATCGGGGCTACGGTGATAGGTCGTGGTCGTACTGCTGCGAGGAAGTTCTTAATCTGGTTAGGAGTAGCACAGTACACATCAAGTGAACTGGAAGTATTTTATCAACGTTTGCAAACTCATACAATGGGAGCTCCTGAGAACTGCGTTCCAAACGAGGAAGAAATGCCTGAGAAGAAGGAATATCCCTGGAATGTGGATGGTTGCGATTCTGTAACTTGTCCAAACTCCGTTAGTGAtgcaaatgaagaaaatgacATTGAATCCAGAACAACTGTCACTGGTGATGTTTCGATAGAAGGAGTTTCATTGAAGACTTCGGGTCATCCAATACGACCGCTCCCAAATTTTGATCACATCGAAAGAGAGTTGGGGTACTCTTTCAAAAACAAGTTTCTCCTTCTTGAAGCCCTCACGCATAATTCTTATCCAAGATTCTTATCACAAGTCTCGGAAACTTACCAGAGAATGGAGTTCGTGGGCGATGCCATCTTGGATTATCTTGTCACGTTGTATATGTACGAGCATTTCCCAAATCTCAATCATGGCGACGCGACAGATTTTCGTTCTGGACTTGTGAATAATTTTACGCTGGCTTTTCTTGCTGTCCAGAAGAATCTTCACCAGTCGTTGAGATACATGTCACCACAATTACTGGATGTGATTGCtcagtttttgaaattcttggaaaagCAGGAATTGAAACAGGACGAAGTGTATACGTCAATTGATGCGTTTGTCGTAGGGGCTTCTGAGGTGGAAGAGAGTTTGATCGAAGTTCCCAAGGTGCTAGGAGATGTATTTGAAGCTCTTGTTTGCGCCATCTTTCTTGATTCTGGTATGAATCTCGAGTTGGTATGGAAGATTGTTCTTCCTATGTTTTTGCCTTTCATTGATTATTACAAAGATAACATACCACGATCACCCATACGAGTTTTAAAAGAAACTTTTCCCGACACCGATCATGTTACCTTCAGCGTGGCTCGCAAGGCATTACAACACATACGTAATGAAGACACGAAACTAAATGAGGGGAAATCGTAA

Transcript

ENSAPQT00000037466

Protein

ENSAPQP00000033504.1

MESLEQDECLRTVVSTSSEKLGTKMLHQLNEFRQDGTLCDAKLRLEGKEFTVHKVVLSSSCPYFRTLFTANMKERKQTVIDLKCPIDLAGRMDDFLTFLYTTKVQLTDENVEGLIVAADYFNVAELKELGCRFLQQNVNLSNGIALHGFAGRYHCEPLREMTRDFLVENFTAISQTEDYLLTDPVQLLEIVSSDELVLSSEEELYEGILRWVRHDLTNRTGFFPELFSKVRLQDVGRTYLAETIANEKLVTNDPVCSDLLMRTILECYVTKDVSNATPSRFHECVFVNGGREPTGATASSYIFVPALNTWFKIPSMSTVRYSHGIAAIGDDVFVLGGYSKNGFTAEVEKFNVKSRKWSRGQALPTPMKGMAVTRYDPQTERWEVKASLHVSRSGASLISVGNFLYAIGGKASDNQMLSSMERYSITDDTWERMSEMSHKRAYGVAASVANGNILVVGGINEVGEVDTIDHVMYNPTAGVWFPVADLSVPRAFAGVAVHGEKVYVFGGEGTGTRYHNTVECYDCLGMPILAIKRPQQEVELFNFALHNDCVLVVSEQTSKCFICYQIINEFLQNEILDTNPLIEILSQLLPRKPVVFSGPNDAALLSDEENVLLTTTSNFNRCLTKGYISPNEISVIIFLTTSNTDTGHSTVLKSFSKKNAEQRIIGLVELGLQDVHNASDLKSQLDVLESLYDMPVFMSKDLLAMNAYGEEIAVETFPYSPKNLNPIERNIWKHLNDLSDFLQDTNLATVSESISKLRAVVLWAAEILTTFGLWSFSLMQENIQNTLSQMLKKENNLFVVLAIQTCKTQFDFLQKLVDNQPKTQSLHSCLMDEMLEKLVPYQVLGKSEQDINEHEIAVNLPPNGHVLCENVVQASLNKQSIGNNTSFKGPEVVKKQIQKLKDKSRFNCIVVTRSNALAKMLSKLINSMSARNAKYSFIKCGCVVQAKNDCTEDEERTESVLQAVRQGMVNVIVTTSNQFADLFLTTFNVLIYFGIPSSYGDFYWIKNKVKGFAPKLMFVFNSAHSSKMECNLQVFRDIESEIAERVSDYITPENKEKWLSRLSEEPCNYTPFGDNGPSVTMESSIYLINRLVLLCFFSLIDYSIHSFLFSPVQADKGNKEDMEVGRLKSRMLACLECVKVLHRCGKMDNDLDLIEEFYVDANSENLQNCELEEGKGRAGTNKRKRVYEIKVPSFFDDNMPRANETCFLYKITFEDPTIYKHSRSGSLQSLTEPELELGILSRKKLPEVRIFFKRVNLLSSFEYLQLPPWNLQRIRMFHCYVFKELYKLNNQVTTLSESVGYLAVPLLPKTPSRTTLSGVGCEIHYDFLQELSMFFQASADPNMKLNTNTPRKDFNFFQSKIVRRINESANQTHYTRYFVAKVCQDLSPLSPFPDQDVAATFADYYENRYGIQVNRQQPLLLVQHVPTQVNFVTPRLRNQTSEDLSLKVSKTEIHLIPELCSVLPLSASAWSLARYLPAVVYRLEAILRAQEMKLKLGAVGHANGLGTDHHGVGDGSDCVGNGDGDDGVGNGDDGVGNGDGSDDASGNEGAVGHANGLGTDHHGVGDGSDCVGNGDGSDCVGNGDGLSVSLMLHALTAKSVGQQFHSEQLELFGDSFLKLEVSLELFLTDPEKDEWVLSIYRKRLVSNDMLSTQGRRLGIPEYITITLPDLTNTSIPPGFILETSQGVKKASLNLYTHQVLGDKHVANCVEALIGATVIGRGRTAARKFLIWLGVAQYTSSELEVFYQRLQTHTMGAPENCVPNEEEMPEKKEYPWNVDGCDSVTCPNSVSDANEENDIESRTTVTGDVSIEGVSLKTSGHPIRPLPNFDHIERELGYSFKNKFLLLEALTHNSYPRFLSQVSETYQRMEFVGDAILDYLVTLYMYEHFPNLNHGDATDFRSGLVNNFTLAFLAVQKNLHQSLRYMSPQLLDVIAQFLKFLEKQELKQDEVYTSIDAFVVGASEVEESLIEVPKVLGDVFEALVCAIFLDSGMNLELVWKIVLPMFLPFIDYYKDNIPRSPIRVLKETFPDTDHVTFSVARKALQHIRNEDTKLNEGKS

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VCU9	Endoribonuclease Dcr-1 OS=Drosophila melanogaster OX=7227 GN=Dcr-1 PE=1 SV=1
Q25BN1	Endoribonuclease Dicer OS=Gallus gallus OX=9031 GN=DICER1 PE=2 SV=3
A0MQH0	Endoribonuclease Dicer OS=Cricetulus griseus OX=10029 GN=DICER1 PE=2 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006466 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|BTB · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF20932 all species →	Dicer_dsRBD	Dicer, dsRNA-binding domain	Domain	Interproscan
PF00651 all species →	BTB	BTB/POZ domain	Domain	Interproscan
PF07707 all species →	BACK	BTB And C-terminal Kelch	Domain	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan
PF02170 all species →	PAZ	PAZ domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR003100 all species →	Domain	PAZ domain	Interproscan
IPR044441 all species →	Domain	Dicer, double-stranded RNA-binding domain	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR000210 all species →	Domain	BTB/POZ domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR036085 all species →	Homologous_superfamily	PAZ domain superfamily	Interproscan
IPR011705 all species →	Domain	BTB/Kelch-associated	Interproscan
IPR011333 all species →	Homologous_superfamily	SKP1/BTB/POZ domain superfamily	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0004530 all species →	Molecular Function	deoxyribonuclease I activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006309 all species →	Biological Process	apoptotic DNA fragmentation	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000033504.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.