Gene detail

Detailed information of ENSAPQP00000033606.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3999277.1, F-box WD repeat-containing 4 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000037570

GAACcacgttcccagggtcttgatccaaTCAAAAACCTTCTCACTATTATTCTATTATTCTCACTATTGGCGTAATGAAATTTTTCGCGTTCAAGGTGAAAATTTTGTGCCAAGTGGAAGCAATTATTATTTCATGAATTACGTCATTTCAATGATTTCATTAATAGTTTCTGTACGATTTTGAGCGCAAAAAGAAACATCACTGTTTCCTTTTTGCTATGAAAACGTTTCAAAGCTGTCTTCCAAAAGAAAGGGATACATAACCCCGATCACCATTAACATGAGTGTGCGACAAATACATGGAAAATATGTCGATCGTCGACTTGCCAAACGATGCTTTGCTGGCTATTTTTACACACTGTGATTATAAAACATTACTTATAATCGCACAGGTTTGCAAAGCTTTCAACAGGCTGGCTAGCCAAGATGTTTTATGGAGACCTATTTCAAAACGATGTCTCAATATTACAACGAAACATGAAAGCAAGTacagctggaaagattgcTGTGAGATATCGTTCAAGTGGGTGCATGGGAAATTCCGTGAGATAACTAtggtcaaatttcaaaacaaGCTTCTTCCTTGGCTCCAGCTCAATTCAAaccatttatttttatcaaatgagAACTGCATTCAAATGTATAGTCCTAATCGTGGACAAAAAAGACTGGCCAATCCCATCGCCTCTATTCCTTGTGGAGAACATGATGTTACGAGGTTTGTCGTGAAGGATAACTTGCTTGTGAGTGGCTCAAAAGATGAAGTGACTGCTTGGAATATTAAAGATAAATCGCATTCTAAAATAATGACATTTGTGGGTCATACAAAGTCTGTCTATTGTGTTGAAATGCTTGGTGATGTTGTGCTGTCAGGATCAAGGGATCGTTCAATTAAGATATGGTCATTAAATTTGGGAAAATGTCTAACAACAATAAATATTGGAGATTCAGTGAGATCCTTGGTAGCAAATTCATTTGATGGGAGGTTTGTGGCAGGAAGTGCAGGGTACTTACCAAGAAACTCTGCTTTGAGACTTTACGATTGTGAAAGTGGTCATCAGTTGAGTGAGTTGATTTGTGATAGCAGTGGACGACGTGGTGCTGGTGTGTTAGacttgaagtttgaatcttcaaatattttgttatccTGTGGCTATGATACAGCTGTAAGGTTGTGGGACATGCGAATTAGTGGAAGTTGTTGCGTGAAGAAATGGGAAGATCCACATGATTCTGCGGTGTACTGCGTGGAGTCGGATAAAAAATGGATGGTACTTAGTGGTACCTACAGATACGGAGTGGTGAGGCTTTGGGACAAACGAATGGATAGATGTGTTAAGTACTACCACGCAAGTCGCCACACAACAAGTTCAGTGTATTCCCTCAAGTTTAACCATACAAAACTTTTTGTGGCCTTGGACAACAGGCTAAATATTCTGAACTTTGATTTGAAATAATCCTGCAGTTATGCTAACGTtacaatttatttaaaaatatatattagatATGTACAAGTGTACAGTATATGAACAATATTGATAAATTAACTcaatttctatatatatatactatatataactcAACTGTACATATCTGTAACTGTACTATACTTTTTTATAGCAGCGGATAAAACGTCTAACACGTTATCGTTCAAATCacaatattgtttttaacCTAAAAACAGCCATTCTCTATCTTGAATAGATGagttttgtgaaaaatgcaTTGCACATACCTCTTTATGTGCTTTGAAACAAATGTCTATTTGGTTCTGTTCGCAAAGTCTTCACGAGTTTTGGGTCCGTCACGGCTTCATGGCTCAAAAGTGAAGTCCTCTTGCAACGTAAATCTCACTGTAGTTTGCTCCAGGTTGAGAGAGAACCACAACGTTTCTTCTATGCCATTCTGAAATTAATTGAGATGAAAATAAAGTATTTGATATATGGACTAAAATAAGACGTAACTTTAGTTTATATTTCGATCATATTTCATGAGTTGTTCTGGTGATGTTTGTATGTAATAAAAGCTTTGAAATATACTAATTCCAATGTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JMJ2	F-box/WD repeat-containing protein 4 OS=Mus musculus OX=10090 GN=Fbxw4 PE=1 SV=1
P57775	F-box/WD repeat-containing protein 4 OS=Homo sapiens OX=9606 GN=FBXW4 PE=1 SV=1
A2QP30	Nuclear distribution protein nudF OS=Aspergillus niger (strain ATCC MYA-4892 / CBS 513.88 / FGSC A1513) OX=425011 GN=nudF PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007475 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan
PF12937 all species →	F-box-like	F-box-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR052301 all species →	Family	SCF Complex F-box/Wd Repeat-Containing Protein	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR001810 all species →	Domain	F-box domain	Interproscan
IPR036047 all species →	Homologous_superfamily	F-box-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14381 all species →	DACTYLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10262	FBXW4, SHFM3; F-box and WD-40 domain protein 4	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.