Gene detail

Detailed information of ENSAPQP00000033809.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4004385.1, ribonuclease Oy [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000037773

TAACGTTATTTGTCATTCAAATTTCGAAGCATATTTGACAGATAATTATCGTTATCGACTTAATCGAATCTACTTCATTggctatataaataaatatttctctCAATTACCGGAAGTGCGCACGACACCGGAAGTAAATGtgcaaaaaatttttgtttatatacGATGAACGTGCCGGTAAATTTGTCTTTTTCAGGAACTAAGAAAGTGCTCGAACAGTAAAGGGCAAAAGCGAACTGCCCCATTCATTGAATTTCATTCACTACGTCAGTTCCTTCGCTCTTGCACAACTCACAAGCATGTTTTATGCGGGTTTCCTTGGCTTGTGTCTATGCTTTGTTTTGTCATGTGTGAATTGTCGTAATGCCACAAACTACGACTATGATCACTTCATCTACACGCAGCAATGGGCACAAAGTGTCTGTGATTGTGACGACTCTGGTAACGGCCATTGTCGTATCCCAGACACTGTGAAGACTTGGACTGTTCATGGATTGTGGCCAACGCTTGGAAAAACGGAGGATCCTCAGTATTGCAACAGATCTTGGCCTTTTGAAGAGGCACAAATTCTGgacattgaagaaaaaatggaaatttaCTGGCCATCCCTTTTGACCACATCTCATAATTCAAGGATCTCGTTTTGGGAACACGAGTGGGAAAAACACGGAACATGCTGTACAGATCGCCCCATATTAGACACTgaacataaatatttcaacacagGCCTGCAACTGAACAGAAAATATGAGCTTTTAAGcaTGCTTCAAGATGCCAAGATCGAACCGACTAGGACAAAGACTTACAAGCTCAGTGATTTTCGCGAAGCAGTGCAGAAAAGAACAGGACACACGCCCATTCTCCATTGCTGTAAAAAAGATGGCAAGCAAAGAGTCCAGGAGATCATGATTTGTCTGgataaaagtttgaaattaatCGACTGTGCTGAGAAGGACGAAGAATGCAGCAGTGATGCTCCAGTGTATTATGAGCCCTTGAATCCATTTTAGTtctataatattttgtaaaatcttaggagaaaataaatgaatacTTTAGTGAAGTAGTATGGGGCGGAGAACAATGCGTGCCTATACATGCATTCGAAGAAATCAACTCAACAAAAGTCAATTGGAGATCAAGACTAGATTATTGTCGTACAATTTTATAGAATGTAATTAACTACTCATTGCTAATTATACATTGAAGTTTATTGATAGGTTATATAAGcttaatatatatttgtaattcTAGCAGTTCTATACTATAGCAAATTGTTTGTTTAATACTTTAATTATCGTTTACTTCAATCAACTATAAAAGTTTGTATGTAACTTAGTTTAGGCAGGTGCTTTATAGGTAAACGTTTCCTGGTGTACGTTCTCATTTATCAAACTGGTAGGTTGGCATCGTGTGAAATTCTTCTGGAGTTATCTTCCCATCTTTGTTGATGTCAAAAATCCCAAACGACTTTTGAACGCTCGTCTCGGTCAACTTCAAGACGTTGGCGAATTCCCTCTTACTTATTTCTCCGTCTTGATCGGTGTCATAATAAGTGAACCGTTGAGGCGCTGGTAATTCAACAGGGCTGCCATCAGGGTCAGAAACGGCGCGTTTCTTTACCGATATGCAAGGGTTTGTGCAAACACGTCTACAGGGTCGGGACACACGACAACCTCTTCTGTCACAAATTCGTATCGGAGAACACACTCTTCTACACACAGGTTGACAACGACTTGTAGTAATTCTACCACGGCCACCACCCCCACCACAAGACAATGCAAGCGCGACAAACAGCGTTAAAATGAACGCCGATTTcagaaacattctgaaaaaaaaatcaaagttcAATGTTTGCACAAATGTTGGTACGAGCAATGCAATAATATGGCGAAAAATCAGTCCCTCGGAGAATTTATAGGTTCTCACATCTTCCGTTTCAGCTACTGAAGAGCTTCATGCACTCATCATATATCTGCTTTTTCGCGCTGCATGTCATGTGCCGCGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P42813	Ribonuclease 1 OS=Arabidopsis thaliana OX=3702 GN=RNS1 PE=1 SV=1
P42815	Ribonuclease 3 OS=Arabidopsis thaliana OX=3702 GN=RNS3 PE=2 SV=1
P19791	Ribonuclease M OS=Aspergillus phoenicis OX=5063 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004166 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00445 all species →	Ribonuclease_T2	Ribonuclease T2 family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036430 all species →	Homologous_superfamily	Ribonuclease T2-like superfamily	Interproscan
IPR033697 all species →	Family	Ribonuclease T2, eukaryotic	Interproscan
IPR001568 all species →	Family	Ribonuclease T2-like	Interproscan
IPR033130 all species →	Active_site	Ribonuclease T2, His active site 2	Interproscan
IPR018188 all species →	Active_site	Ribonuclease T2, His active site 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11240 all species →	RIBONUCLEASE T2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0033897 all species →	Molecular Function	ribonuclease T2 activity	Interproscan
GO:0004521 all species →	Molecular Function	RNA endonuclease activity	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01166	RNASET2; ribonuclease T2	EC:4.6.1.19	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.