Gene detail

Detailed information of ENSAPQP00000034057.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977313.1, Afadin [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000038030

CATGCTGTGTTGAGGAACAAAAATTCCTCGGAGCGTGAGGAGCTCGAGAAATTAATCGAGGATTGGAATGCCAGCCGACTCGATATGTTTACAATCAGTAAACCTGATAATTTGGATTTTTCGGGCAATATGCGGTTTTATTTTCAAGAGCCCGGCGCGAGAGATACAAAGGTTTCGACGAAGGTTCTTCGTGTGAACAGTTCAGAAACTACTGACGAAGTTATGAAGAAGCTTGTGTCGAAATTTCATCCTGATATGAAGATGTTAACAATGCCGAACTACTCGCTGTACGAGGTTCATGAAACTGGCGCAGAAGCCCACAAACTCGAATTGGACCAAAGGCCTCTTTATGTACAGTTGGATTGGACAAGAGAAGACAGAGATGGTCGTTTCTTGCTCAAAAGCGAAGATGACCTGATGACTCAAAAGCTGTTTGAAGAAGAAGGATCAGCACGAAATCCAGAGAAGCGAAATACAAAACAACGTCTTTCAAAACGtggtggaaaaaataaaaagaaaggTGCTCGACCAGATGAAAACACTAACAATccaatacaaaaattttaccaGGACAAACCTGAATCTTCCTTCACAAGAAGTAAATCAAATCCAGAAATTGTCATGAAAATGCAACGACAGAAAAAGCTTGAAGAcagattgaaaaaaatgcaagATCCAGTGACATCAGGCGGTGGTGGTGGGCCGCTACGAATCTTTGCAGAAAGCCTTCAACCAGAGAACCCTTACAAAACAATATTGTGTGCAAGCAATGATACAACTGAAACTGTTTTAAAGGAAGCCTTAGGGAAATATGAAGTACCCGCTGAAGAAATGGACCAATATTGTCTGACAATGGTCACTATTGCCCCTGGAAATCAGAGTGATCCAGAATCTTCGTCAGGTGTGACGGAGAAGGTTGTGCCTGGTAAAGATTGTCCTGCTGCTATTGCAGCATCATGGCCTGAAAATAGAGGTGAACTTCGTTTCTAtctgaagaagaaagaaaacatGCCAAAACGTAAACAACAACCAAGGAGAAAAAGTCATGAACCTGCTGTAAGGGTCCCAGGCAGAACTGGTCCAGCAGTTAGTGAACATAGCCCTTCAACTGCTAAAGAAACAACATTTGATGTAACACCGCATGCTCCAAATGAGAAGGATCCTGGTTCACCGGCCGTACATGTTGTGGATGCTGCTCGAGATCTTCCTGCTACGTTGGAGTTCCATGAGTCTGGAGAAGATGCTTTCTTTGCTGTGGTTGTGAGTGAGGTCAATGGATCTGCAGTTAACTTCAAACTTGCACCAACATTTACACTTTACATGTGCTGTCGCTATCGCCTTTCCTCAAAATTCCGCCCAGAGTTCCCTTCAACCAAGAAAAAGGACAAAGTAATGATGACAGCAAAAAAGGTTGCAAATATGATGTGGCAGACTGTCATGGAAAAGAATGGCATGGCAGGTCATTTGGCATTCTGGATGGCAAACTCTTcagaatttttgcattttctcAAACAAGATGTGGAGCTGTCAAGTATGACCGAGGAAAGTCAAAAAATCCTGGCTCACACCACACAGCAAGCTTTTCGTTCACTTGTTCAATGCATTAAAGGAGAACTTCAGAACTGTCTTCCTGCATTCCTTGATCCCTCGGAAGAAAGTGATCATGATGAGAATGGTGAGAATGGGGTGGATGATAGATTTGATCCAATGGAAGGTTATAAATCCACTGAACGTAGCTTTAAAGTCAGGCAGTTTGGGCCACAGGGACAGCCTATTGGTGGCGACCAATGGATGGGGAACAGAAAGAAGAGTCCACGACCAGTTGTAGGAGATGTCCTTCACACACTCAAGGCTGCAATGGCATTACTTCGAAGATGTCGAGTGAATCCAGCGCTTACAATTCAGTTATTCTCCCAAGTCTTTCATTTCATCAACATGTGGCTATTCAACCGTCTTGTCCTGGAGCCACAACTGAGACTGTGTACAAGATTGTGGGGTATACGGCTGCGAGAGAGACTGGGGCGACTTCAGGATTGGGCAGAAAGCCAAGGTCTTGAATTAGCTGCTGAGTGTCATTTGGCAAGGATAGGCCAGGTTTGCTCTTACCTCACTGCTGCACTGTTGCTTCAACTTCCAAAGCAAGACTCGACAGCCATTTCGTCACATTGTTTCAAGTTGAACTCTCTTCAAATCCGGCAACTGCTTGAACTGTATCAACCAGAGAGAGACGAAGCTGACATTTCACTTGAACTTATTGAGAAAGCTGTCAGTGTTGCAGAAAGTACAGCTGATGAGCTGGCTCGTAGTGAAGGTCAAAACGTCATTCTTGAAGAGGAGCCAGAACTTCATCTGCCATTCCTTCTGCCTGATGATGGCTATTCTTCAGAAAAAATACGTGGAGTTCCTCCTGGTTTGAAAGAATTCCTTGATCCATTGATTACTCCAGGTCTGTGCAGACTAACAATTCAACCTAAGGCATCTGGTCTTTGGACAGTTCATTTCAAGACTCCTGTTATTAGAATCTCCATCAATAAAGGAACAAGAGGGATGGGTGTTAGTATCATTGCAGCTAAGGGTGCTGGACAAGAGCACTATGGTATTTACGTTAAAGAAGTCATTGAAGGTGGACCAGCAGCTCTGGATGGTAGTCTGAAACCTGGTGATCAAATAATCGATGTTAATGGTGAATCATTGGTTGGAATACAGCAAGAGGCGTATGTAGTTAAATATTTTCCCCTCCAGAAAATCTTCTTAGCCGTTTATAAACATGGTTTAGTGGAGTTATTAAGCAATGTTGCGCCTGTTCAGCAGGGTATGTATGACGAGATTCCTCCAGTCCAGGTGAAGACCGTGGTGAACTATCAATTGGACGACCCCCCTCCTGGACGGAAACCACCGGTTGGTGTCAAGACTGCCGTCGCTCTTCCTTATGCAAACCCGCTAGAAATACAACGACGACAGAAGGAAATGCAACAACGCAAAGGGCAGGAAGAGCAGGAGAAAGAAAACTTCGAGAGAGAAAGGATTGCAAGGGAGCAAGAACGAGCAAAGAAAGTTCAAGAAGAAAGAGAAGAAGCTGAACGAATCAAAAGAGAAGAGCAAGCTCGCCAGGAACGCGAGAGATTGGAAAGAGAACAACAGCAAGAACGACAGAGGATTGAGAGGGAGAAACAGGAACGACAGAGGATTGAAAGGGAACAACAGGAGCGACAGAGGATTGAGAGGGAGAAACAAGAACGACAGAGGATTGAAAAGGAACAACAGGAGAGACAGAGAATTGAAAGGGAACAACAAGAGCGGCAGAGGATTGAGAGGGAGAAACAGGAACGTGAGAGGATCGAGAGAGAACAGCAGGAACGACAGAGGAGAGAACGGGAAGAACAAGAAAGACTTGAAAAAGAAAGACGGGCGAAAGAAGAACATGAGAAAAGATTACAACAGGAAAATGGCTTGGATGAAATGTCTCGTCGGGAACGAGAGTTGGAGATGCTGTTGGAGCAAGAACGTCGGGAGAAAGAGAAACGGTTGAAAGATTTAGAACGACAAATACAAGAAGCGCGGGAAGACGctgaaagaagagaaaaagaGTTGATGGACCGTTTGAGAAGAGAACGAGAAGAACGCAAAGAACCAGTGAGGATGACACACGTACGATACGTAAACGATAAGGTAGAGAAAAGTGAGATGGTGAGAAATGATGATGCGCGATCGAGCCGGCCAGTGAGAGCACCAACACCTGCTGAGGTGAACAGAAGTGATGAATACACAAGACGACCTCCATTGCCGAATGAAAatagaaatgaagaaatgcgACCAAGCCGTCCAATGGAGTACAACAAACGAGGAGCAATGCCAGCGGATGAGAACAGAAACACCCCTCCAGTAGCAAGACGACGCCCCGCGCCACCAAATGATGAGAACCGTGGAAGAAACCCGGCATTACAAGATAGCAAAGAAGATTCATTTGACATGGATCCAGCGGAGATTGAACGACAGTTTCAACAGCGTCTTGCACAGGAAGGTGTGGGCACGAGCGAGGTGGACGGGCCGCGAGTCATCCGGGTGCCTGTACAACAGGATAATTGGGAATCACGTGGGAAGGATGCGGATGAGAGACCTCGTGCGCGCGTGGACTGGCAACGAGAGGAAGAGGAGAGAAATCGTAAGGAGCAGCAATGGCGACGAGAACAAGACGAGCAGCTGGTTCGagattttcaacaaaatgaGTCCTTTAGACAAGCCCCTGCAGTGGCCGAGCCAGTACATCCAAACCAAGGAGACTGGGAGAAAGACGAAGAGTTACGACGACAGCGCGAGGAAGACGACCGTCTCCGAGAAGCGAGAGCGAATCAACTCCGAAATAGGATCATCGAACGTCCCGAAGACGATGAAGATGTTCGTGATACGTCGTACAACGGCAGAACCCGACGTGTAAAGTTTGCAAGTGTTCGTACAGAAATCATTCAACCAGCACCTGACGCAGATGTGCCGAAACACGAGGTGATCTTTGTTCATGACGGGAAAGTGGAAGACACGAATGATCCTCCAACCCCCAGGGACGAAGACGATGAGCCTCTTCCCCCTCCTCCCCAAGATCTAGTCCCCGAGTACTACCAAAGGCCACCACCCCCGCCCAAACCTCAGAACTTGATTAGTAACGGAGGTGTTAACCCTCAGGGTGGTCCTAACCCACCGCACTATAGAGACAATGAACATATCGCCCGTGCGCGGGCTAGAGTCAGTGATGACGGTTATGCGACGTACCCTGGACCTGCCCGTCAGCAACAGAATAACAACTACCCTGTGCCCAAACCACGTGGTAGTGTGTCAAGCTCAAGTCCAGACAAGCTACCATTTAATGACAAGATGAAAGTATTCAACGAAAACACACCGCCGAAGAAGCAAATGAACTCCAAATGGGAACAAAGATGGAGCAATGGAGATTCCTTATGA

Transcript

ENSAPQT00000038030

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P55196	Afadin OS=Homo sapiens OX=9606 GN=AFDN PE=1 SV=3
Q9QZQ1	Afadin OS=Mus musculus OX=10090 GN=Afdn PE=1 SV=3
O35889	Afadin OS=Rattus norvegicus OX=10116 GN=Afdn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004405 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan
PF00595 all species →	PDZ	PDZ domain	Domain	Interproscan
PF01843 all species →	DIL	DIL domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001478 all species →	Domain	PDZ domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR036034 all species →	Homologous_superfamily	PDZ superfamily	Interproscan
IPR028842 all species →	Family	Afadin	Interproscan
IPR037977 all species →	Domain	Afadin, cargo binding domain	Interproscan
IPR002710 all species →	Domain	Dilute domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10398 all species →	AFADIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007165 all species →	Biological Process	signal transduction	Interproscan
GO:0005911 all species →	Cellular Component	cell-cell junction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05702	AF6, MLLT4; afadin	-	Leukocyte transendothelial migration	ko04670	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.