Gene detail

Detailed information of ENSAPQP00000034084.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3978181.1, procollagen-lysine,2-oxoglutarate 5-dioxygenase 3-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000038062

ATGTTGCGTTTAGCCGCGATTTcctttctttttttcaatgcTTTCTGTTTGGTGAAGTGTACAGGTGACTACGAAGGCTTGAGACTGTTAGGTCTCACGGTCGCTACGGATGAAACCGATGGATTTAAACGCTTCATGCGATCTGCGGATATCTTTAACATCCAAATCAAGGTTGCCGGAATGCATGAAGAATGGAAAGGAGGGAACATGGAATTGTATCCAGGTGGAGGCCACAAGCTAAACTTGCTGCGTAAGGAGATTGAATTGGTCAAAAATGAAACTGATTTGGTTGTCATGTTCACTGACAGCTATGATGTGGTATTTGCTGCTGGAGCtgatgaaattttaaaaaggtttttAGCATTCAAAGCTAAAGTGGTCATCTCTGCTGAAGGATTTCTTTGGCCTGACAAGACTTTGTTGAATAAATATCCCGAAGTAAAGGaaggaaaacgttttctttgCTCTGGAGGAATAATCGGTTACGCGCCGGAAGTGCACAAATTGATGACGCATCATAAAATTATGGACACTGATGACGACCAGTTATATTACACCAAACTTTATCTGGACGAAACGTTGCGAAGTGAACTACAGCTGAAATTAGATCACAAAAGTGAATTATTTCAGAATCTCAACGGAGCAAAAGATGAGTCGCAGCTTGTGGCGGATGAAAACAACGTATGGTTCGAAAACACGCTTTATGGTACAAAACCTGTAGTTATTCATGGCAACGGTCCGTCAAAGTTATTTTTGAACTACATTGCAAACTACATTCCCAAGGGATGGAATCCGAAGGATGGCTGTTTAAGCTGTTTAGAAAATACGTTCAGCATGAACGACTACAAGCCCGAAGATTATCCAAGTGTTCTTGCAGCAGTTTTCGTGGAAACTCCTACACCATTTTTCTCAGAATTTTTCGAACGACTTGTGGCCATGGAATATCCGAAAAGCAGAATTGACGTGTTTATACATAATGTGGAACCGTTTCACGAAAAACAAATCCAAAAATTTATAGCTGATCATGGAAAATCCTACAATTCTCTGAAATATGTTGCGCCTGCGGACTATTTCAGTGAAACCAAGGCCAGAAATTATGCCCTGGAGTACTGTCTTTCCAAGAATTGTCAATATGTTTTTGCTATGGACTCTAATGTTGTGTTATCTGAACcgaaaacactgaaaattcTTATGGAACAAAACAGatcGATCATCGCTCCAAAGCTCAGTAAATATGGCAAGTTGTGGTCAAACTTCTGGGGTGACATTGGAAGTGATGGATTCTATGCCCGATCAAGAGACTACGTCGAAATTGTTAACAATGAAAAGAGAGGTGTCTGGAACGTACCTTTCGTATCGTCATCCTACCTTGTGCATCACAGCGCTTTGAGACAACTTAAAAATCCATACAGCAGCACGACATTTGAATCGGATATGGCTTTCTGTGCTTCGGTTAGGTCTAAGGGGATATTTATGTACGTCGACAACCTGATTTATTTCGGTCGTCTGTTGGACACATCGATATTTAGCACGACACGAAAACATGGAGACATGTATGAAATGATAAATAATGTTCTGGATTGGGAAGCAAAGTATCTTCATCCTGACTGGCACAAGATTAGGACACCGGAATGGAAAATAGAAGAGCCATGTACAGACGTATTCTGGATCCCACTTTTCTCAGAGACATTCGCTACTCATCTGTGGCAGGAATGCGAGCATTTTGGCGAGTGGTCTGGCGGTGGACACAAGGATAAACGTATTGCTGGTGGCTATGAGAATGTCCCAACTGTTGATATTCACATGAATCAGATTGGCTTTGAACCACAATGGATGCACTACCTAAAAACATATGTAGCTCCCATTGCAAACTACATCTTTACTGGATATTATTCCAAGGCACAAGCCTACATGAACTTTGTGGTGAAATATCATCCCGACAAACAATACTTCCTTCGTCCTCATCACGATTCTTCCACCTATACCATCAACGTAGCGCTCAATAGAAGAGGAATTGACTACGAGGGAGGTGGAGCTCGCTTCACGCGTTACGACTGTTCGGTGCAGGACACGAAGATTGGTTGGGCGTTGATGCACCCTGGTCGTCTCACACATCAACACGAGGGGCTCCCCACCACCAATGGCACCCGGTATATCATGGTGTGCTTTATCGATCCTTGA

Transcript

ENSAPQT00000038062

AAGGCTTTATTAGACTTTATTACTGGCACTGGCATATAACCTGACATCAAAAATCAGCTATTATTCAGCGATTTAAGGTGGAAATCACTTTAGCAACATCATTAATAGTTCATTTACATGTTACCAAGGGAAAACGGCCACGATTCGTGAGAATGTATCAAAGAGAAAATTGCAACAAAGAAGCGATTAGAACGGTCACGTGACCTAATTAGAATAGTTTAAAAACATTCGAACACGAAAAAAATGTATCAATTTACACACTCGGACAGATATCAGTCCGTGTCGGTTCTTGGTCGAAAATGTTGCGTTTAGCCGCGATTTcctttctttttttcaatgcTTTCTGTTTGGTGAAGTGTACAGGTGACTACGAAGGCTTGAGACTGTTAGGTCTCACGGTCGCTACGGATGAAACCGATGGATTTAAACGCTTCATGCGATCTGCGGATATCTTTAACATCCAAATCAAGGTTGCCGGAATGCATGAAGAATGGAAAGGAGGGAACATGGAATTGTATCCAGGTGGAGGCCACAAGCTAAACTTGCTGCGTAAGGAGATTGAATTGGTCAAAAATGAAACTGATTTGGTTGTCATGTTCACTGACAGCTATGATGTGGTATTTGCTGCTGGAGCtgatgaaattttaaaaaggtttttAGCATTCAAAGCTAAAGTGGTCATCTCTGCTGAAGGATTTCTTTGGCCTGACAAGACTTTGTTGAATAAATATCCCGAAGTAAAGGaaggaaaacgttttctttgCTCTGGAGGAATAATCGGTTACGCGCCGGAAGTGCACAAATTGATGACGCATCATAAAATTATGGACACTGATGACGACCAGTTATATTACACCAAACTTTATCTGGACGAAACGTTGCGAAGTGAACTACAGCTGAAATTAGATCACAAAAGTGAATTATTTCAGAATCTCAACGGAGCAAAAGATGAGTCGCAGCTTGTGGCGGATGAAAACAACGTATGGTTCGAAAACACGCTTTATGGTACAAAACCTGTAGTTATTCATGGCAACGGTCCGTCAAAGTTATTTTTGAACTACATTGCAAACTACATTCCCAAGGGATGGAATCCGAAGGATGGCTGTTTAAGCTGTTTAGAAAATACGTTCAGCATGAACGACTACAAGCCCGAAGATTATCCAAGTGTTCTTGCAGCAGTTTTCGTGGAAACTCCTACACCATTTTTCTCAGAATTTTTCGAACGACTTGTGGCCATGGAATATCCGAAAAGCAGAATTGACGTGTTTATACATAATGTGGAACCGTTTCACGAAAAACAAATCCAAAAATTTATAGCTGATCATGGAAAATCCTACAATTCTCTGAAATATGTTGCGCCTGCGGACTATTTCAGTGAAACCAAGGCCAGAAATTATGCCCTGGAGTACTGTCTTTCCAAGAATTGTCAATATGTTTTTGCTATGGACTCTAATGTTGTGTTATCTGAACcgaaaacactgaaaattcTTATGGAACAAAACAGatcGATCATCGCTCCAAAGCTCAGTAAATATGGCAAGTTGTGGTCAAACTTCTGGGGTGACATTGGAAGTGATGGATTCTATGCCCGATCAAGAGACTACGTCGAAATTGTTAACAATGAAAAGAGAGGTGTCTGGAACGTACCTTTCGTATCGTCATCCTACCTTGTGCATCACAGCGCTTTGAGACAACTTAAAAATCCATACAGCAGCACGACATTTGAATCGGATATGGCTTTCTGTGCTTCGGTTAGGTCTAAGGGGATATTTATGTACGTCGACAACCTGATTTATTTCGGTCGTCTGTTGGACACATCGATATTTAGCACGACACGAAAACATGGAGACATGTATGAAATGATAAATAATGTTCTGGATTGGGAAGCAAAGTATCTTCATCCTGACTGGCACAAGATTAGGACACCGGAATGGAAAATAGAAGAGCCATGTACAGACGTATTCTGGATCCCACTTTTCTCAGAGACATTCGCTACTCATCTGTGGCAGGAATGCGAGCATTTTGGCGAGTGGTCTGGCGGTGGACACAAGGATAAACGTATTGCTGGTGGCTATGAGAATGTCCCAACTGTTGATATTCACATGAATCAGATTGGCTTTGAACCACAATGGATGCACTACCTAAAAACATATGTAGCTCCCATTGCAAACTACATCTTTACTGGATATTATTCCAAGGCACAAGCCTACATGAACTTTGTGGTGAAATATCATCCCGACAAACAATACTTCCTTCGTCCTCATCACGATTCTTCCACCTATACCATCAACGTAGCGCTCAATAGAAGAGGAATTGACTACGAGGGAGGTGGAGCTCGCTTCACGCGTTACGACTGTTCGGTGCAGGACACGAAGATTGGTTGGGCGTTGATGCACCCTGGTCGTCTCACACATCAACACGAGGGGCTCCCCACCACCAATGGCACCCGGTATATCATGGTGTGCTTTATCGATCCTTGAAATCCACTTCCATCACTCAAAAGAAtcgaaagtattaaaaagagTTGGACTATATGTATCTTTTTTCGACCGCTGAACATTTTTTTACAGTTTACCTTACGCTTATAAGCTACGTAGAAATGTACGTGCGAAAATTTGCTGCGCTTAAGTTGACCGCTCAGGCAGATTCAGTAACGAGACAAAATAAGTCGCCACTAGTACTTAAATAAGACGCGAACTTGATGTGTATGCCCGCCTGACAGATAAGCCGGGAAAAATGCGTGTTGGAGGGACAGGGTCGTATAAATAATGGCCAAACTCGCGTCTTATACAAGTCGCATTTTATGCAAGTCGTGACTTGTTTTTTCTCGTATGTAAGTGGGTGTGGCCCTaatgttgagatttctttgtaTACCCGTTACGAAACCATGTAATAGCGTAAATTCCAGTGCGATTTGGAAAAGGTGAGTGAGATTTTCAAAGACAGTTGAAGGACGCCCGAAGGAAGTTAAAGGCCTAGAGCCGTTGGTTGAATTGTAGTCCGAGTTCCAGTAATTTTAAATGCACGGAGCTTTTAACCCAAGCTTGCTGCTTGACAATGCTGTTCTTAGAAATGCCGCATTTTTATATTCACCTAATTAATCTTAGAGCTTGCAGATAtttaaatgatatttttatacaGATAAATTTTATTGCTTAGAGTAAATAATAAAGAGTATTTCAGAACTATTTCAGACATTAGTCTTGTATTATTCTGACGCAATATCATCACAATCATCTGTAAGATGAAATTTTGATCATACAAGTGATACAACGTGATATTAAATACAACCCAGTCACGTGATGCAACCCACCCGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5U367	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Rattus norvegicus OX=10116 GN=Plod3 PE=1 SV=1
Q9R0E1	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Mus musculus OX=10090 GN=Plod3 PE=1 SV=1
Q5R6K5	Multifunctional procollagen lysine hydroxylase and glycosyltransferase LH3 OS=Pongo abelii OX=9601 GN=PLOD3 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004076 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03171 all species →	2OG-FeII_Oxy	2OG-Fe(II) oxygenase superfamily	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029044 all species →	Homologous_superfamily	Nucleotide-diphospho-sugar transferases	Interproscan
IPR005123 all species →	Domain	Oxoglutarate/iron-dependent dioxygenase	Interproscan
IPR044861 all species →	Domain	Isopenicillin N synthase-like, Fe(2+) 2OG dioxygenase domain	Interproscan
IPR050757 all species →	Family	Collagen-modifying Glycosyltransferase 25	Interproscan
IPR006620 all species →	Domain	Prolyl 4-hydroxylase, alpha subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10730 all species →	PROCOLLAGEN-LYSINE,2-OXOGLUTARATE 5-DIOXYGENASE/GLYCOSYLTRANSFERASE 25 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0008475 all species →	Molecular Function	procollagen-lysine 5-dioxygenase activity	Interproscan
GO:0017185 all species →	Biological Process	peptidyl-lysine hydroxylation	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan
GO:0016705 all species →	Molecular Function	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	Interproscan
GO:0031418 all species →	Molecular Function	L-ascorbic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000034084.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.