Gene detail

Detailed information of ENSAPQP00000034116.1 in Leptogorgia sarmentosa

Genomic Location: :...
NR annotation: CAB3987711.1, lactadherin-like, partial [Paramuricea clavata]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSAPQT00000038100

ATGGTTACGTCAATGTGTTCAGTGACGGCATTCAACGCTAAAATGGAAAATGCTAGTTGCTCTCCAATACAAGTTATGTTGGTGGAGAGTGCTGATTATGGAGATTTTGATATGCAAGGCAACTTTAGTGACGACAAAAACATTGATTCACAATGCAGCCAGCTGACGAATTGTCAGGTGAAATCTCTTTGCGGTGGTAAAAGATATTGTGAACTGACAATGGACAGTAATTTACTGCCATCGAAATATTGTCCTGATACTtcgaaacaaatatataacaagTACACTTGTGTGGATGTCTACAGCTCCTCCGCTATAACTACAGCGACCAATATTAGACTGACAAACCAAAACCAAGGGTACATCGAAATGAAAGATGGTTCAATTTGGAGGAaagttgttgaaaaaaactggGATGAGAATCGTCACAAAATGCTGTGTCAGCACTTGGGATTTGAAGAAATCACTGGCAATAATATGGAAAGTAAGCAATTGGAGAGTGGAGAAGCGATTGCAACTGGAGATTTGATATGCTATAACAAAGAAGTCAACGGGACATCTTGCTGTGTCCACCTTGAACCTTCAATAACTACAACAACGACTGTGGCTCCATATGTGACCTGCAAAATATGTAACAACCCGCTACTACACAATACAACCACGTTTCCAGACTCCGTGTTTTCTGGACGTGGTGACTCAAGTAATAAATACAGAAACGCGAGAATTAGTAAAGACGGTTGGTGCTTATTCGGCACTGGATATCTTTTGCTCGATCTTAAGAAAGAATATCACATTACACAAGTTGTTGTTATGGCTGACAAAGAACAAACAAAGTGGGCCAGCTCCTATATCTTGAAATACAGTAACGACATTACTTACAGAAAAAGCACAGAGATATCTGGAAACCAGAACGGTCATCAAGGATCAAGAACAAACCTTGACATTTATAATGTCAGACACGTGAAAATACAGTCCACtaataatacaaaattttgtctacGAATAGAACTCTGTGGAGAGGTTCAAACGCCAGCTCCAGTATCTAACATTATGGTTTCACCATCGCAATACTCTGCAAATGTGACTTGGGAAATATCTACATCAATTCAAGACTCCAGCTACATAACACAGATCATCATATACCTCAACGACCAAGTACACAAGACTATATCTCGAGGGACTCAGGTCGCTGTTAACGGACTTTTACCCAACACTTCGTACGCTGTGGGAATTCAAACTCAAGATAGTTTTTCTCAAAAGAGTCAAATAGTTACCAAAGCTTTTAGGACCAAAGAAGAAGGCAAAATGTGTAACAACCCGCTACTCCACAATACAACCACGTTTTCAGACTCCGTGTTTTCTGGCAGTGGTGACTCACGTAATAAATACGAAAACGCGAGAATTAGTAAAGACGGTTGGTGCTCATCTGGCACTGGATATCTCTTGCTCGATCTTAAGAAAGAATATCACATTACACAAGTTGTTGTTATGGCTGACAAAGAACAAACAGAGTGGGCCAGCTCCTATATCTTGAAATACAGTAACGATGTTACTTACAGAAAAAGCATACAGATATCTGGAAACCAGAACGGTTATCAAGCATCAAGAACAAACCTTGACATTTATAATGTCAGACACGTGAAAATACAGTCCACTAATGATACAAACTTTTGTCTACGAATAGAACTCTGTGGAGAGGTACAAACGCCAGCTCCAGTATCCAATATTATGGTTTCACCATCGCAATACTCTGCAACTGTGACTTGGGAAATATCTACATCAATCCAGGACTCCAGCTACATAACACAGACCATCGTATACCTCAACGACCAAGTGTACAAGATTATTTCTCGCGGAACTCAAATCGCAATTAACGGACTTTCACCCGACACCTTTTACGTTGTGGGAATTCAAACTCAGGACGGATCTTCACAAAAGAGTCAAGTAGTTATCGAACCCTTCAGGACCAAAGAAGAAGTGCGTCCAATcgttttggaaattttgtcaTCTTCTCTTAAAAAGTATACGTACACTGTCTCCTGGAATAAACCAGCTCAATCTATTCTGAAGTATTACATAAACTACGCGGTCCTAAATGGATCCAGGAACTCAAAAACTGTATCAAAGGAAATGACATCTATTACTATTGATGTTGAATTTCAGAAGCAGTATACATTTGCAATACAAGCCGTGACACAGGCAGGAATAGTTGGTGTGACGTCAAAAACCTGGATCTCTCATTCAGCGCCCTTGGAAATAGCGAATAAAATGAACGATAGTTACACCGTAAAACTAAAAAAGCCAAAGGAAGAGCAAAAAATTAGGAAGGTCGCTCTTGTTTTACTCAAATCAAAGTCATGCTCAGATAATCTTCCCGCGCCTGAAGAAGTCCAGCTGCAGACGTCGCCTCCTTCTGAGGGAGAGGATGTTGTCGTGTTTAGAGCCAAAGTATTTGATATCACTGAATTCCAAGCAGATGCCATAGAAATATCACTTCAACAGTTCAAAGACAAACGTAGAAGGAAGAGGAATGCTGTTGTCGTTCAGGCACTGGCACCTATGTCAACATACAGAGCTGCACAGTTGAATACGGATGAGGCAGGGAATAAACTTTGGTCGTATTGGAGTGAACCTTTTATGTTTACTGGAGCTATACCTAGTGTAAATGCAGAAGAATCCAGTGAAGAAAAAATCCAAAACGAACTCCTCATTCCTCTGGTTATTTTTGTCCTGATTTCCTTGCTCTTACTTGGTGTAATCATTTATCAACGTCATCTTTTTCGAAATAACAATAGACAGTCAAGCCACAATTGTGCGAGCAAAGCACCAGGACAGGAATCTCAAAAGAATAAATCCAGCAAaTTCCGAAGGTAA

Transcript

ENSAPQT00000038100

CTTGAATGGTTACGTCAATGTGTTCAGTGACGGCATTCAACGCTAAAATGGAAAATGCTAGTTGCTCTCCAATACAAGTTATGTTGGTGGAGAGTGCTGATTATGGAGATTTTGATATGCAAGGCAACTTTAGTGACGACAAAAACATTGATTCACAATGCAGCCAGCTGACGAATTGTCAGGTGAAATCTCTTTGCGGTGGTAAAAGATATTGTGAACTGACAATGGACAGTAATTTACTGCCATCGAAATATTGTCCTGATACTtcgaaacaaatatataacaagTACACTTGTGTGGATGTCTACAGCTCCTCCGCTATAACTACAGCGACCAATATTAGACTGACAAACCAAAACCAAGGGTACATCGAAATGAAAGATGGTTCAATTTGGAGGAaagttgttgaaaaaaactggGATGAGAATCGTCACAAAATGCTGTGTCAGCACTTGGGATTTGAAGAAATCACTGGCAATAATATGGAAAGTAAGCAATTGGAGAGTGGAGAAGCGATTGCAACTGGAGATTTGATATGCTATAACAAAGAAGTCAACGGGACATCTTGCTGTGTCCACCTTGAACCTTCAATAACTACAACAACGACTGTGGCTCCATATGTGACCTGCAAAATATGTAACAACCCGCTACTACACAATACAACCACGTTTCCAGACTCCGTGTTTTCTGGACGTGGTGACTCAAGTAATAAATACAGAAACGCGAGAATTAGTAAAGACGGTTGGTGCTTATTCGGCACTGGATATCTTTTGCTCGATCTTAAGAAAGAATATCACATTACACAAGTTGTTGTTATGGCTGACAAAGAACAAACAAAGTGGGCCAGCTCCTATATCTTGAAATACAGTAACGACATTACTTACAGAAAAAGCACAGAGATATCTGGAAACCAGAACGGTCATCAAGGATCAAGAACAAACCTTGACATTTATAATGTCAGACACGTGAAAATACAGTCCACtaataatacaaaattttgtctacGAATAGAACTCTGTGGAGAGGTTCAAACGCCAGCTCCAGTATCTAACATTATGGTTTCACCATCGCAATACTCTGCAAATGTGACTTGGGAAATATCTACATCAATTCAAGACTCCAGCTACATAACACAGATCATCATATACCTCAACGACCAAGTACACAAGACTATATCTCGAGGGACTCAGGTCGCTGTTAACGGACTTTTACCCAACACTTCGTACGCTGTGGGAATTCAAACTCAAGATAGTTTTTCTCAAAAGAGTCAAATAGTTACCAAAGCTTTTAGGACCAAAGAAGAAGGCAAAATGTGTAACAACCCGCTACTCCACAATACAACCACGTTTTCAGACTCCGTGTTTTCTGGCAGTGGTGACTCACGTAATAAATACGAAAACGCGAGAATTAGTAAAGACGGTTGGTGCTCATCTGGCACTGGATATCTCTTGCTCGATCTTAAGAAAGAATATCACATTACACAAGTTGTTGTTATGGCTGACAAAGAACAAACAGAGTGGGCCAGCTCCTATATCTTGAAATACAGTAACGATGTTACTTACAGAAAAAGCATACAGATATCTGGAAACCAGAACGGTTATCAAGCATCAAGAACAAACCTTGACATTTATAATGTCAGACACGTGAAAATACAGTCCACTAATGATACAAACTTTTGTCTACGAATAGAACTCTGTGGAGAGGTACAAACGCCAGCTCCAGTATCCAATATTATGGTTTCACCATCGCAATACTCTGCAACTGTGACTTGGGAAATATCTACATCAATCCAGGACTCCAGCTACATAACACAGACCATCGTATACCTCAACGACCAAGTGTACAAGATTATTTCTCGCGGAACTCAAATCGCAATTAACGGACTTTCACCCGACACCTTTTACGTTGTGGGAATTCAAACTCAGGACGGATCTTCACAAAAGAGTCAAGTAGTTATCGAACCCTTCAGGACCAAAGAAGAAGTGCGTCCAATcgttttggaaattttgtcaTCTTCTCTTAAAAAGTATACGTACACTGTCTCCTGGAATAAACCAGCTCAATCTATTCTGAAGTATTACATAAACTACGCGGTCCTAAATGGATCCAGGAACTCAAAAACTGTATCAAAGGAAATGACATCTATTACTATTGATGTTGAATTTCAGAAGCAGTATACATTTGCAATACAAGCCGTGACACAGGCAGGAATAGTTGGTGTGACGTCAAAAACCTGGATCTCTCATTCAGCGCCCTTGGAAATAGCGAATAAAATGAACGATAGTTACACCGTAAAACTAAAAAAGCCAAAGGAAGAGCAAAAAATTAGGAAGGTCGCTCTTGTTTTACTCAAATCAAAGTCATGCTCAGATAATCTTCCCGCGCCTGAAGAAGTCCAGCTGCAGACGTCGCCTCCTTCTGAGGGAGAGGATGTTGTCGTGTTTAGAGCCAAAGTATTTGATATCACTGAATTCCAAGCAGATGCCATAGAAATATCACTTCAACAGTTCAAAGACAAACGTAGAAGGAAGAGGAATGCTGTTGTCGTTCAGGCACTGGCACCTATGTCAACATACAGAGCTGCACAGTTGAATACGGATGAGGCAGGGAATAAACTTTGGTCGTATTGGAGTGAACCTTTTATGTTTACTGGAGCTATACCTAGTGTAAATGCAGAAGAATCCAGTGAAGAAAAAATCCAAAACGAACTCCTCATTCCTCTGGTTATTTTTGTCCTGATTTCCTTGCTCTTACTTGGTGTAATCATTTATCAACGTCATCTTTTTCGAAATAACAATAGACAGTCAAGCCACAATTGTGCGAGCAAAGCACCAGGACAGGAATCTCAAAAGAATAAATCCAGCAAaTTCCGAAGGTAACAACAAGACGACGAAAGCCGTCAAATCCGCTGCAGATGACTTGTACATGAATGATGACAACGCATATGAGTCGCCCGACTGCGTTATAAAAGGTATTGGGAAAATTGAAGCTGAATCTCAACGAGATTCTGCACGAAAATCCTCGACCTACATGTCTCTGAAAGACAACAGAGAACCTGAGAACGTTTACCAACATCTTCAGCACCCCAACGATCACACAGTCGAATACGAAAACCCTGCATTTACTTCATCCAAGGAAACGTAAATTCTGCATGTAGTGTTTTTCGTTGTCGACCATATATAAGGTTTTTTACCACACTTGTGTGAGTATATTCTAACATTATATAGCTTTCTTCAGAAGACAATTTCATGgcatatataaattattccaTGGTACTATAACTGTATCttacttcattatctattgtttgaattgcatttgataCGACAAAAGTTTGGGATAGGAGCGACCTCTAAACGGGGCCAATACAACGACGAGAATCACTAAATTGAAAttctataaatatattataatgattCGCACGTGATATTATTCAGCAGTAGCCAATCATAGCAAAGCATTAGGaaaataagccaatcagagcttcgtaaAAATCTAACCAACAGGACGTGAGAAACATATCACAATCAGTTTTAAAATAGCCTTTTTAACAACATGGGTGTTGATTGATCAAAGGTAACGGGC

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00530	SRCR	Scavenger receptor cysteine-rich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001190	Domain	SRCR domain	Interproscan
IPR036116	Homologous_superfamily	Fibronectin type III superfamily	Interproscan
IPR008979	Homologous_superfamily	Galactose-binding-like domain superfamily	Interproscan
IPR036772	Homologous_superfamily	SRCR-like domain superfamily	Interproscan
IPR043159	Homologous_superfamily	D-galactoside/L-rhamnose binding SUEL lectin domain superfamily	Interproscan
IPR000421	Domain	Coagulation factor 5/8 C-terminal domain	Interproscan
IPR003961	Domain	Fibronectin type III	Interproscan
IPR000922	Domain	D-galactoside/L-rhamnose binding SUEL lectin domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24543	MULTICOPPER OXIDASE-RELATED	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0016020	Cellular Component	membrane	Interproscan
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0030246	Molecular Function	carbohydrate binding	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K06485	ITGA6, CD49f; integrin alpha 6	-	CD molecules	ko04090	deepkoala