Gene detail

Detailed information of ENSAPQP00000034128.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4025060.1, LIM domain-binding 2-like isoform X4 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000038111

AAGTAAATAGTTCCGACCGGATGTATGTACTCCAGTGACGCTGGTCCCCGGGTGTTAGACCTCTAGCTATAGTACACAATGCGCGTTTGAAGTATTCACTCTCCaaacaaagatggcggccCAAGGACGCTGAAAAgacaaaaatgtttattaAAAGAGCGATGTTTTCCATAATCTGAGTTCAAAACAATGATATTGACCACCTGATATTTATACACTGGCGTTCGTGGCGAGCGCccgaatttaaaatttcacgaGGAAATTTTCAACGCCCGCTTGTCAAAATTGAGCCTCAGAGGATGCCCAGTGTGCCCTTACCGAGTCCCAGTTTCTCACAAGGGTGCCACACTCACTATACCAATCCTGAATACCGAATTCATGAACTGAACAAACGTCTGCAGGAGAAAAATGAGGCTGATATTTTGTGGTGGAACGCATTTACCTCCGAGTTCTTTGAAGATGATGCGACCATGACATTAAATTTTTGCCTTGACGATGGACCAAAAACATTCACCATTGGTCGGCATCTCATCCCGAGGTATTTTCGAAGCATTTTTGACGGCGGGGCGACGGATCTTACATACACGTTACTGCGGCCCAAAGAAAGTTATCAGAACAATATAATCGTTTTGGACTGCGAAAAAGCGACAATGATGACAACATACTGTCAACGCCTCCACACCAAGGTGGTGACGGAAGGACGACTGATGATAGAATTCACGTTTGATGACTTAATGAGAATACGAAACTGGCATTTCGTCGTCCACCATCACGAGGAGTTCGTATCGCGGAGCGACCTCACGCCCGATCTCAATTTCATAAACGAACAAGCGAAGAACATCACGTGCAAAGGAATGACCAGCAACACACTCACATTACTTAATATTTGTTTTATTCTTGAGCCGATGCAAGAACTTATGTCCCGACATAAAACGTATAACATGAATCCTAGAGACTGCCTGAAGTCAACGCTGTTTCAACGATGGAGAATGTTTGGTTCGCCAGgAGGGCCAAGTATGGAGAGCAATCATCAACCAGAAATACCTTGGCCAGtacaacaacacaacaatATCGGCAAAGGGCATCGAAGGACGTCGACATCGAAACGAGAAGGAAATCCAAATCCGAAACCAAAACGTCGACCATCGAAACGAAAGTCATCAACGCCAACATCCTCGGCCACGCCGAACACCACGCTACCTCACAACAGCTCTGTGACGAAGAAGAAAAATCTTTCGCCCAGTCGGACGGTGGGGAACTTCGGGTTGACTTCGCAAGACGTCATGGTGGTCGGTGAGCCGTCCCTAATGGGTGGGGAGTTGTGTGACGAGGATGAAAGGCTTATCACAAGGTTAACATCGCTGGAGAACACGGGCTATGACGCTGCCGTTACTCAAGAGGACGAATTTCGCAACAGTCCGCTCACCAACAGCAGTCCAGTTATGGCACCGTGGTCAGGGGAGGCCAGGAAAGCGCCGCAGGAGGATGGCGTGAACGAGTAACTATACACATTGTACAACAGATAGAGATATTTAAAGAACTTATGCAACGAAATTTCACACCACTACGCATTCTATGACCGCCCTGGGAAGAAAAATGCTATCTTATTGGAACACATGACAAAATCATGAAGTTTACGTAGATCCAGATGGGATATTCTCAATAGTTTTTCGATTTCGGCCGGACATTCTCATACGATTCGTGTTCGTCAAATTCTTTTATCATAACACTAAAATCGTATTCTCATGCTTCGCGCTCAGTGGTCAAACATCGAACaaccctcagtactaaacattgtgctcgtgcttcgcgctcgGTGGTCAACAATCAACCCCTCAGTGTTtctatatagcgctcagtgagACCGTATTTCATTTGTctcactgagcgctatataaaaactggacacaaATATGTAACAACGCGGTTCACCTCTTGATCTGGATTTTTTTACCATTTTAAATTAGGCTAGTGTTCCAATGTGGTCACGACAAAGTGGTGTGAAATTTCGTCGTATTAGCATTTTTAAACTCATCATTAAGATACCTCGAAAGGTGAAGGCTGTAGTTTTGCTACAAGACCACATTCCTAGTGATGTGCGTCCATTTGTATGCGTAGCAGTGTACTTGCGCTGATAACAATCGGCAGGTACATTATTAACATCATCTGCGCGCTTCCACGAACATTATCTTGCAATCCTCGTATGTACATATTCTTTTTTTTTCCTCTGTTGTGCCAATGTCACGTCCTACTCTGGTCCCATGTGTTACTAACTTACAAGCACTTGAAAGGGAGGTCAAGATACCCCGGGTTGCGGGTATCGCCATTTTGCTTCTCAGTTTTGGTTGATGTCAGTAATTTTACCCGTAATTTCTTCACGTTTTCCCGCGGTTTACCCGTAAAGGTCAAACGATTGAGAGCGAAATTTGATGCAATGCCCAGGGACAAATCTAATTTGGAAAGTCTGGACAAATTGAGCAATATTAATTCTTGTTATTTTC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NVL6	LIM domain-binding protein 1 OS=Xenopus tropicalis OX=8364 GN=ldb1 PE=2 SV=1
O73715	LIM domain-binding protein 1-A OS=Danio rerio OX=7955 GN=ldb1a PE=2 SV=1
Q9W676	LIM domain-binding protein 2 OS=Gallus gallus OX=9031 GN=LDB2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001819 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17916 all species →	LID	LIM interaction domain (LID)	Domain	Interproscan
PF01803 all species →	LIM_bind	LIM-domain binding protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR041363 all species →	Domain	LIM interaction domain	Interproscan
IPR029005 all species →	Family	LIM-domain binding protein/SEUSS	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10378 all species →	LIM DOMAIN-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000122 all species →	Biological Process	negative regulation of transcription by RNA polymerase II	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0030274 all species →	Molecular Function	LIM domain binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24143	LDB2; LIM domain-binding protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.