Gene detail

Detailed information of ENSAPQP00000034175.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3983710.1, DDB1- and CUL4-associated factor 4 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000038168

acaatgcagaattcctgcttttaaggattgttatcaAATGAATGTCACGCGCACGTCTTCGCGGAaggaattatttataaaattccttaattttccccaaagtaggcgaattctgacaatagtttttatattggcaaaatcCGAAACAGtgcagaattcctgatttcaaggattgttataatACAAATTACAATGGAATGTcgtcgttcccagtctccctcacattaaaatccaagatggtgCAAGTAATGTGAATTTTGTGGTattgtttttttcgtttcttcgtGGTTTCTTCCTTCATGGAAGGTAAACGACGCcatttcaaaggaaaaaaagaaactgGACATGAGTTCAACAGTTCAAAGAGTCGGCAGAGGCCAAAAACAAGGGATTGTGGTCACAGAAagcaacaaaatataaactgtGAAAGACTCATTCAGGCCGCTCAACAAGCGAGTTCAAGTATCTCAGAGACAACAGTTTCAGAGATCCCTGGATTTACTTACGACCCAGTAAAGAAAAGATATTTCAAGAAAAGGCAAGGACAGCCAATGGATTTTGGCATGAAAAATGAAACCGAATGTGAAGATGTTGCAGAAAAACCAAGGCGTAAAATTCTATCAAGattacaatatttacaaaagaGAGAGAGAAATATTTCCTGCAATAACTTGCATTTCAAAAGAAAAGGTTTAGAAGAGTGGGCAAGGAATATTACTGAAAGGAAGTCATTCGTGTTGAGCGACACTCATCCTTGCCCTGCTTTCAAAGGCTCTCTGTCAAATCTAGCTttGTCCCATCATTCTGGTAAACTTGTCACAATTGTAAATCTTCCTGGCTTGGGTTGCAAGACTGTCCATATATATGATATGAAGAATGATAAGACGGAATTCATCAGACCTCAAATGCTTGCGACCATAGTTTCAAGTGAGGTTACACATGTTGAATGGAATCCCAATGAGAACATGAAAAACTATTTCTTATTAAATCTTTTTGGCTGTGGAGGTACCGAAGGAGCAGCCATTGTGTGCAAGTTTAATGAATCTTTACTTTCATGTGAACTAAACAGCTATCCTCTTCACAATGGTACAGCTTGGCATTGCAGTTGGTCGAAGAATCCTCAGTCATCTAGCCTCCTAGGCATTGCTGGTAACCAACAGGCAGTTTTGGTTGATTCTGAAAAGAAGTCGATGATTGGTAAAATAAGATCCTCAAGTGATGTCTTTtgtattgaattttgtcacaaGAGTCCCATGGCTTACCTAGGTTGTCGTAATGGCAATGTCATGTGTGTAGACATTCGAGAAAATCATACCAAACAAAAGACGCCATTCAATGTTAGTGGAAAAACTAGATCCTCTGCCACATGTCTGAAAGTTCTGCAGgatgaaaattatttaatgACAAGCAGTATTGAAGGAATGATTAGAATGTGGGATGTGCGTTTATCAAAGTGTGTCAAAGAATATGTgggaaatacaaatgaaatgaagatCATTCCGTTTGTAATGGATTCCTCTGAGAGTATCCTGGCTTCAGCTGGTACTGATGGTAAAACAAGGATATGGAGTGTACAAACTTGTGAACTGTTCAAAACCATTGATGTAACTAACACAAGTAGTGACAGAATAGACATTCCACCTGTATGTCTGGGAGAAAACTGGGCACTAAGAAATAACTTGATGGCTCTTGCCTTGGGTATTGAAGATAAACTGATGCTATATTTTTGATGCATTTGAGGTTTTTAAAGAGTTTGTACATACATTTGAGACACTGACTATCATTTAGGTCATCTGTAATGATATCAATAAGTTAAAGAAGATTTATTTATCTATAGAGCGGTTCAAATTAtagttttataatatatttcaagtTCCCTCGAGCATCGACAAGAGATTTTAAGTATTTTGATGGAATAGTCCATCATTTACAGGTATCAATTCTTTATTGCAAGATTGTTTTGGAAATATTTGTTCTGTTCTTAGAGACATTGATTCAGTTCAAGTGGTTACGACAAGCCAATCGCTGATGCGACATTGTCAACAAATGGAGGCAGGTAAAGATAAGTAGAATACGTTGACATAGCAATCATAGAAACAGCTAAAGCATCTGTTTATCTTGGTTAAGGGAAGCTAGTTAACAATATACCACCCTTTTATATACAAAAGGTATAAATAAGTGCACTGTACCACTTGTTAAAGTAAAAAATCAGAAAGATATTGTTATCAAAGGATACTAAACAGCATTTTCTCCCAAGGCTCCAACATATACAATGCTGTAGTCACTTCATATCTGTATATTGTAAGGTTGATCCATTCTTTCATGCCAC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8WV16	DDB1- and CUL4-associated factor 4 OS=Homo sapiens OX=9606 GN=DCAF4 PE=1 SV=3
Q58DC2	DDB1- and CUL4-associated factor 4 OS=Bos taurus OX=9913 GN=DCAF4 PE=2 SV=1
Q3SXM0	DDB1- and CUL4-associated factor 4-like protein 1 OS=Homo sapiens OX=9606 GN=DCAF4L1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006935 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR052254 all species →	Family	CUL4-DDB1 E3 ligase complex substrate receptor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR44472 all species →	DDB1- AND CUL4-ASSOCIATED FACTOR 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0080008 all species →	Cellular Component	Cul4-RING E3 ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000034175.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.