Gene detail

Detailed information of ENSAPQP00000034225.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4000525.1, calpain-A-like isoform X2, partial [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000038229

ATGTCTCAAGAAGGTAACTACAGGTTTAGAAGGCAGAGTTCTCGTGACAACTTGGAAACGTTCGAAGAAGATGACTCCACTCCCAAAGCTACGGTTACAAAAACGAGACAACAACGTTACAGCGTCATTCGTGCTGAAAAGTCGCCGCATATGGATTTTACACAAACTCCTTTCGGCAACGATGATATGTTCAACGCCTGTTTCGATGATTGCGAGGTGGAAGAAGACACTCGTATAAAACGCGAACGTAAGTTGTCCCAGGCGCATCCTTATAATGACACCTGGATGTCGGAACGTCGGAAGTTCTCGTTGGACATGCCTACTTCGAATGGAAAACTCGTAAAACGGTGTGATGCTATAGAAACTGGACTCGACTATTCGTTTGACGACGGCTTTCGCTCTGGTTTTCTTCCGCGCAGAAATTCGGAGTTTTTCAACCAGTCAAACTTGCTGACCagatcatttcaaaacgaactCTATTATAGCAGATTCCCCGGATATGGACCACCACAAAGTGAGCGAAAGGCCTATGAAAAATGGAGCCACAAGAACGTAACGGTTGAATCAAGTCTCAGCGATATTTACAAAACGAGGAAAATGCCTCAATCATACGAACAGATCAAGCAGTCGTGTCTAAGATCAGGAAGACTGTACGAAGACCCCGACTTTGAAGCAATTGACGACAATGTTTTTACAAGCCGTCGCCCGCCCCGACCATTCGTATGGCGTCGCCCAACTGAAATGGTGGAGAACCCAATTCTGGTCGACGCAGGTGCAAGTCGTATGGATGTTGCACAAGGCCGTTTGGGAGATTGTTGGTTCTTGGCTGGCATTGCATCTTTGACCCAGTATCCGATCATGTTTCAACGTGTTTGTCCCATTGCTGATCAGAGTTTTGATAAGAAAGACTACTGTGGTGCTTTCCGCTTCAACTTCTGGCAAGGTGGAGAATGGGTGGAGGTCATTATCGATGATCGTCTGCCAACCATCAACAATCAACTCATTTTTGTGCATTCAAAGTCAAGAAATGAATTTTGGAGTGCTTTGATGGAGAAGGCTTATGCAAAATCCCCAAATACACTAAAAGGTGGTCAGACAAAATCTTTCGATCTTGGCTCAAAAACCCCAAAGGATCTCTTCAAGATCATGTCAAAAGCAATGGAGAGGCAATCGCTGATGGGCTGCAGCATTAATGCCAAACCAAACCAGATTGAAGCAAAGTTGGACAATGGTTTAGTCATGGGTCATGCATACACTGTGACAGGTGTAAGAAAGGTAAATGCAAGAACTAGGTCTGGTCAAATGGAAGTGGAACTTGTGCGAGTTCGAAACCCTTGGGGAAATGAAAGAGAATGGACTGGTGCTTGGGGTGACAAGTCCTCAGAATGGGCCCTATTGTCTGACAAAGAGAAGAAAGAGATGGAGCTGACatttgatgatgatggagaaTTCTGGATGAGTTACCGTGATTTCATCAGCAATTTCCAACGATTAGAAATTTGTATGTTGAGTCCAGATGTAAATGTTGAAGATTCAAAGGTTACCTGGGCTGCAGATATGCATAAAGACAGATGGCGTGCTGGGTCCTCTGCTGGTGGTTGCCGTAACAACCCTAATACCTTCCACAAAAATCCTCAATTTAGAGTGACCCTGactgatgttgatgatgatgacgatgatgatacCTGTACCTTGATTGTCAGCCTCATGCAAGTTGGCCGACGAAAGTTGAGAAAGAAACTGGGTGCAAATTCCAATCTCACTATTGGCTTTGCCATTTACAAGCTTGAAGATGAGGACATGAAGGCGGCACGTCTTGACAAGGATTATTTCCTCTATCATGCTTCCACTGCACGTTCCAACACTTTCATCAATGCTCGAGAACTCACAAATCGTTTCAAGCTCAAACCCGGAGCGTACTGCATTGTACCATCAACCTTTGATGCAAATGAAGAGGGTGATTTCTTGGTCCGACTGTTCTCTGAAAAGGAGAAAAAGAGCGACATTCAAGATGAACAGACTCGTATAACTCGCAATGTGAAGCCAAGGATTACTGCAAGCCAGGACTCTGAAATGGATAGCAAGTATCGTTCATTCTTTGAGAGAATTGCTGGAACGGTAAGGTAG

Transcript

ENSAPQT00000038229

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q11002	Calpain-A OS=Drosophila melanogaster OX=7227 GN=CalpA PE=1 SV=2
O35920	Calpain-9 OS=Rattus norvegicus OX=10116 GN=Capn9 PE=2 SV=2
Q9VT65	Calpain-B OS=Drosophila melanogaster OX=7227 GN=CalpB PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000851 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00648 all species →	Peptidase_C2	Calpain family cysteine protease	Family	Interproscan
PF01067 all species →	Calpain_III	Calpain large subunit, domain III	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001300 all species →	Domain	Peptidase C2, calpain, catalytic domain	Interproscan
IPR022684 all species →	Family	Peptidase C2, calpain family	Interproscan
IPR036213 all species →	Homologous_superfamily	Calpain large subunit, domain III superfamily	Interproscan
IPR050420 all species →	Family	Calpain	Interproscan
IPR000169 all species →	Active_site	Cysteine peptidase, cysteine active site	Interproscan
IPR022683 all species →	Domain	Peptidase C2, calpain, domain III	Interproscan
IPR022682 all species →	Domain	Peptidase C2, calpain, large subunit, domain III	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR033883 all species →	Domain	Calpain subdomain III	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10183 all species →	CALPAIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004198 all species →	Molecular Function	calcium-dependent cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08578	CAPN9; calpain-9	EC:3.4.22.-	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.