Detailed information of ENSAPQP00000034310.1 in Leptogorgia sarmentosa

Genomic Location: chr8:8121839...8155112
NR annotation: XP_028414734.1, dystrophin-like isoform X4 [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P11533Dystrophin OS=Gallus gallus OX=9031 GN=DMD PE=2 SV=1
P11532Dystrophin OS=Homo sapiens OX=9606 GN=DMD PE=1 SV=4
P11530Dystrophin OS=Rattus norvegicus OX=10116 GN=Dmd PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000935 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF09068
all species →
EF-hand_2EF handDomainInterproscan
PF09069
all species →
EF-hand_3EF-handDomainInterproscan
PF00435
all species →
SpectrinSpectrin repeatDomainInterproscan
PF00397
all species →
WWWW domainDomainInterproscan
PF00307
all species →
CHCalponin homology (CH) domainDomainInterproscan
PF01477
all species →
PLATPLAT/LH2 domainDomainInterproscan
PF00569
all species →
ZZZinc finger, ZZ typeDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR035436
all species →
FamilyDystrophin/utrophinInterproscan
IPR036872
all species →
Homologous_superfamilyCH domain superfamilyInterproscan
IPR015153
all species →
DomainEF-hand domain, type 1Interproscan
IPR001202
all species →
DomainWW domainInterproscan
IPR015154
all species →
DomainEF-hand domain, type 2Interproscan
IPR000433
all species →
DomainZinc finger, ZZ-typeInterproscan
IPR011992
all species →
Homologous_superfamilyEF-hand domain pairInterproscan
IPR018159
all species →
RepeatSpectrin/alpha-actininInterproscan
IPR036392
all species →
Homologous_superfamilyPLAT/LH2 domain superfamilyInterproscan
IPR002017
all species →
RepeatSpectrin repeatInterproscan
IPR043145
all species →
Homologous_superfamilyZinc finger, ZZ-type superfamilyInterproscan
IPR001024
all species →
DomainPLAT/LH2 domainInterproscan
IPR001715
all species →
DomainCalponin homology domainInterproscan
IPR036020
all species →
Homologous_superfamilyWW domain superfamilyInterproscan
IPR050774
all species →
FamilyKCMF1 and DystrophinInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12268
all species →
E3 UBIQUITIN-PROTEIN LIGASE KCMF1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →
Molecular Functionprotein bindingInterproscan
GO:0008270
all species →
Molecular Functionzinc ion bindingInterproscan
GO:0005886
all species →
Cellular Componentplasma membraneInterproscan
GO:0099536
all species →
Biological Processsynaptic signalingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K10366DMD; dystrophin-Cytoskeleton proteinsko04812deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
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