Gene detail

Detailed information of ENSAPQP00000035002.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3989876.1, E3 ubiquitin- ligase TRAF7 isoform X1 [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000039118

GAGGTGATCACAGGTTGTTCATCCAGTGTGCAATATATAGTTCAGTGTCAATTTGAGAAGACAGGATACATAATTTGATACATGAAAagaattgttttgtatttttaaactgttttttcaaacatatGCTGTTGTACTTGAGCAAGATATCATATACAGAGGAGTTGCTTATGATTTAGCACATGTCGTGAAGTAAAATTTGGACGTAAAAATGCGGAACTACACTTCCGATTATGACAGAATAAACATGATGATTTGACaaaaataaagcaacaatGGATTCAGAAGAATCGAAGAAGCGATCAACATATTCGACAACAATGGAAACAACGTTTGGTGCAAACGCTGCACCTGTGGGGGTTCGTGCCAGGGGAAGAAGTTTTCAAGAGGGCGAGTTCCACTCACCACCTGGCTCAGAAAAGAACCAACAGTCGTTCACAGAAGACTCAATGTGGCGTCATAGACGAAATTCAAATGTCTCTGCATGTTCATCGTACCCATCACTAACAAGCAATTTAAGTAATTCAGACAGTGATAAAGTAAATAAGCAGGAAGTTGTTGTGTTTGCGGACAAGCCATCAGAGAAATTATTTTGTATGATATGTTCAGACGTATTTCATGATCCTGTTATTACATCATGTGGACACTCATTCTGTCGAAGCTGTGTTTTATTGCGGAAAGTTGAGCATTGTCCTGTAGATAACAGCAGCttagttgttgttgtttcaaaCTTAGCGGTGTTGGAACAGATCGGTGAACTTCTTATACATTGCAAATATGGCTCCATGCCTTCTGCGACTGAGGAAGGAAAGTATGAAATAAACTCTGCAGGTTGCCCTGTTAAAGTGAAATTAAATTCAAGACTGGAACATGAACAGAGCTGTCAATATGCTCCAATGCAATGCCCTAACAGCATTCTTTGTCCAGCTGTTCTGAAAATGAATCTTGATGAGCATCTGCATCACTGTGAGCACATCAAGTGCATACATGTGAAATATGGATGTCAATTTGAAGGAACAGACGTGGAAGTGAAAGAACATTTAAATACGTGTAAATTTGAACCAATGAAGGAGTTTCTTCAACATTCAGCAGATCAGATTGAGGAACTACAAACCGAATTAAGAAACAAGGATCAGGAAATGACGTTTCTCAGATCAATGTTAGTGAAAATGACAGAGAGGATTGAGCGAGTAGAAAAAACTGTTGATATTCGACTGGATTTCCTTGATGAAGGTCACACGAAATTATCGTCGGAAATCATGGAAACAAGACGAGCAATGACAAAACTGAAGGATGATATTTCTGATGTTGAAGTGAGATTATGGGGCGCCGGATCATTCGACATATACCCATTGTTTAAATGCCGTGGAACCTTTGTTGGCCATCAGGGTCCAATTTGGGCGTTGTGCGTCTCCAATGGTGAATGGTTGTACAGTGGCTCGTCTGATAAAACAATTAAGGTTTGGGATACTCAAAGCACGTACAACTGTGTGAAAACAATGGACGGACACGCTGGCATTGTATTAACGTTGTGTTCTGATGGAAAGCGTTTGTACAGTGGTTCGTCAGATTGCACCATAAACatttGGGATTGTTCGACCCTGGAGTTCGTGGAGAAGATACGAGGACACGAGAATCCCGTGTGCACTTTagtgacgaagaaaaataaattatttagtGGATCATTGAAAAAGATTAAGGTGTGGGATTTGGAGACACTGAAACAAGTGAACGAGTTAACCGAACTCAATCACTGGGTACGAGCATTGGTTGCATCCGAGAATTATTTATACAGCGGATCATACCAGACAATTAAGATTTGGGACTTGGATACTCTAGAATGCGTTCATGTTCTTGAAGCCAGTGGTGGTAGCGTTTACTCACTGGCAGTCACCAAAGAACACATCATTTGTGGCACGTATGAAAACTCCATCATAGTTTGGGATTTGAATAATTACAAACTGCTGACGACTTTGAATGGTCATGTTGGAACAGTTTATGCTCTTACAGTGCTGAGCACACCTGGTCAAACAAGACTTTTTAGTGCATCATACGACCGTTCCTTGAGGGTATGGAACTTAGAAAGTTTGGCGTGTGTTCAGACGTTATTACGTCATCAAGGAAGTGTATCGGCGCTTGCAGTGTCAAGGGGAAGGATATTCTCCGGAGCTATGGATAGCACGGTGAAGGCAAGTGATTGTCAAAACACCCTGGATTTTTTCTCTGTGGTAATACTAAAACTATAGTTGACTCTTTTCTCACTTCAGGTGTGGCAGTGTTAGCAGGTTTTGACAGAGCTTAGTAGCTTGCCAAGATTAGTGAAACTTCTCTGTGCACTCCAGAAGACGTGACCAACCCCTAAAGTTCTCGCAGGCAACGCCCTAATCCCATGCAGAACTCAAACTCCTTTACACCATTTTTGAAGTTCAACGAGAGTTTCTGATCTATTGTAGCATACAGTCAAATCGATCCCAACTAGGTGTACATTTTAATAATCAAAATTActtgaagaaaatgaaatttttattcaagtttaATTAATTACAGTGTATATGTATGACAGTCCTAGAAATATGTAAATAgatggaaattgaaaaaatatattttatttgagATTGGTAATGTTCGTAAGTGTTGTGTGTTGTAAAATATGGTATGGTGAGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q922B6	E3 ubiquitin-protein ligase TRAF7 OS=Mus musculus OX=10090 GN=Traf7 PE=1 SV=1
Q6Q0C0	E3 ubiquitin-protein ligase TRAF7 OS=Homo sapiens OX=9606 GN=TRAF7 PE=1 SV=1
Q9CQ29	RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005094 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13923 all species →	zf-C3HC4_2	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan
IPR020472 all species →	Repeat	G-protein beta WD-40 repeat	Interproscan
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR019775 all species →	Conserved_site	WD40 repeat, conserved site	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10646	TRAF7, RFWD1; E3 ubiquitin-protein ligase TRAF7	EC:2.3.2.27	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.