Gene detail

Detailed information of ENSAPQP00000035385.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4001594.1, RING finger 151-like [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000039568

ATTCTCAGGAATGTGCGACATGTCAtgatttgaatgaaatttaatattcatcaTTTCGTGCTGTTTTAATAAACTCAAACAGAAATCAAACACCGCCAGACATTGTTTATCAAAGTCGCTTCGATTTTTCTCTTTCAACTTTCAAGACGCATCTGGTCGCCTAAAGTCAAGTTTACAACATGTAGGCACTTTTCTGATAATCGACTTGTTCGTGGAAGAATACATTACGAGAAATGGAAGAGAAAATCCAAGAAAGCTATCGACAGTATATTCAACTAGACGACCACCTTTGAATTGAAATGGCTTCGAAAATGGCGTCGTACGTCACTGGCTATGAAGATGAACGATTTGAACAAGTTGTCAGCCAGAGTTTTCACTGTATTATTTGTACGAATGTTTTCAGAGATCCCGTGATGTGTCGCCATAATGAACATCTGTTCTGCAGAGCTTGTATCACCATTCATTTGACGAACTCTCAGACATGTCCGACTTGTATGGAACCACTCACTGTCGACACATTAACCCAAGCACCTCGAGGCATAAGAAACTTACTCTCTGAACTGAAAATTCGCTGTCAATTCTTTGAGCGTGGTTGTATGAAGTATGTTGAGTTAGGAAATCTTGAAAGGCATGTTGCAGACTGTGGTTTTGCTCCAGCAGTTTGCTCTAATGAAGGATGCCAACTTGAAGTGAATAAACAAGATTTAATCCACCATGAAAAGGCTGTGTGTGAACTACGCCGAGTTCAGTGTCACAGTTGCAACGAAATCAAACAAGAGATTGATACGCTGAAAACCAATTTTGAACGAATCAATAAAACGGTTGAGGAAAAGTTGGACAGAAATGAGAAGAAGTTCGACAGGCTTGAGAAGAAGTTGGAGAAGAATGAGAAACAGTTGCAAAGAATTGAAGCCAATTTGGTTGAGAAAGTTGAACTGGTTCAAGGACAACTTAACAATCAAGGAGAGAGTATTCGCCTGGTTCAGGGCGACATTatagaaatgaagaaaagtttGAGTGAAATGACGAAGCTACTGGAAAGAATGACGCAACAAACATCGCACGAAGGTCAGGATGAACacgaagaaatgaagaaagggATTGCGGAAGCGGATGTGATGGACACTGGACCGACGGTTGTTGTTGCAGGAGGTGAGAACCGATGCGGTAGAATAAATTCTGTGGAAATGTTCGATTTATCAACTCAAAGATGGACACCACTACAACCAATGACAGAATGTCGCACTGTATCAACTTCGGTTGTTCACAACAATCAGGTGGTAGTTATAGGAGGTGTCAGTACGGATAATACAACCAATTCCATGGAAAGATTGTCAACGAATGCTGTTCATGTCGACCAGTCCGTGACTTGGGAAAAGCTTACTGCTAAGCTACCTGGGCGGTTGTGGGGACACTGCAGTGTCGTTTATAATGGACGGTTGATAGTGATTGGAGGTTATGATTGGGACAAACGAGCAAATTCTCGTAATATTACTGAGGTTCCTCTTGCCCCACCTCACACCACTAAACTGTTGGCTACCATGCCACAGAAAAGATATTATCATGGTGTTGCAATTTTTGGTGATGAGATTGTGATTGTTGGAGGAAATGAAAGTATGTTCGCAGCTGTCCGAACTGTGGTTAAGTATGACATCACTAAGAAGAAATTTCAGGAGTTAGCACCCTTACCCTACTCTGTGTGCAAGATGGCCACAGTGAAGTGGGGTGATGACAGTCTTATCATCATTGGTGGTGCTGACAGTGACGGTGAACcattaaacaaagttttaaTGTACAACATCAAGACCCAGAAGAGTCGCGAGTTACCTGACATGAAGTACAAGAGGGAAGGATGCGTGGCTGCAGTTGTCAAAGACACTGTGATCGTTATGGGAGGCAGGGATGGAAATGGCAATGACTTGAAGTCTGTAGAAAGTTTTAGGTTCGATCGTCGCACCTGGGAAGAACTTCCTGAAATGCACGATGCAAGATACCTTGCCACTGCAGTTGTATGCTAATCGTGTGTTGCACATAACATTATAGTGAAGTAACTTTGCTTACTGGCCTGAACAATAAAATCAACTTGACTTTGTTTTAGTTACCCACCATTGGCCAATAATCATTAGGATGATAATTCTTTGTAAGTCGCgaatttttgacgaaatcTTTTACCGCTTCATTCAAAATCACGTCGTTCTATGATTGCTATCTTACCAAATCAATTTGCTAGTTTTGAAATTGCTTTTTTGGGTTGAGAAGCTTTAGGTAATTGCATGAGCAATTACCAGTGTTATTAATCGTATAACAAGCGCAACATGATTGAAACGTTGGTTTCAATGACTGAAACTACATTCCAcgcgtaattttctctttggcaaAAAAGAAAATCGCAGAAATCGTCGCAAAAACTGCtaga

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000354 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00097 all species →	zf-C3HC4	Zinc finger, C3HC4 type (RING finger)	Domain	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan
PF01344 all species →	Kelch_1	Kelch motif	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR051746 all species →	Family	Kelch domain-containing protein 8	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR018957 all species →	Domain	Zinc finger, C3HC4 RING-type	Interproscan
IPR006652 all species →	Repeat	Kelch repeat type 1	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR001293 all species →	Domain	Zinc finger, TRAF-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46260 all species →	RING-TYPE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10461	KLHL24_35; kelch-like protein 24/35	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.