Gene detail

Detailed information of ENSAPQP00000036115.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028416270.1, LOW QUALITY PROTEIN: protein transport protein Sec23A-like [Dendronephthya gigantea]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000040426

ATGGCTACTTATCAGGAATTTATACAGCAGAACGAAGATAGAGACGGTGTGCGTTTCAGTTGGAATGTCTGGCCGTCTAGCCGGCTGGAGGCGACCAGAATGGTTGTTCCGGTAGGGTGTATGTACACACCTCTGAAGGAGAGACCAGACCTGCCTCCGATATGCTACGATCCTGTTGTCTGTAGTCGCAGCAGTTGCAAAGCCATTTTAAATCTGTTCTGtcAAGTGGATTACAGAGCAAAACTGTGGCATTGCAATTTCTGCTTCCAGAGAAATGCTTTCCCTCCTCAATATGCTGGCATCAGTGACCAACATCAACCAGCTGAACTTATTCCTCAATTTTCCACCATAGAGTACACATTGCAGCGTGGCAATCCGGGACCATTGATATTCTTGCTTGTTGTTGATACTTGCATGGACGAGGAGGATCTACAGGCCGTCAAGGAATCTCTACAAATGTCTTTGAGTCTGATGCCGCCAAATGCCCTGGTTGGTTTGATCACGTTTGGAAAGATGGTGCAAGTTCACGAATTGGGATGTGAAGGCTGCTCGAAGAGTTATGTTTTCCGAGGCACGAAGGATTTGAATTCAAAACAGATACAGCAAATGCTAGGACTTGGTGCTGCTGCTCGCCAACCAAACGCTCAAGCTCCTGCTGCTGGTCGTGGACAAATGCCATCGCAAGGCAGCGATATTTTCAACAGaTTTTTACAACCGGTGCATAAATGTGACATGAGTCTGACAGATTTACTGGGGGAACTTCAGCGAGATCCTTGGCCTGTTAGTACAGGAAATCGACCACTGAGATCGACTGGTGTGGCCATGTCTATTGCAGTTGGGCTGCTTGAGTGCACGTATCCAAACACTGGAGCCAGAATCATGACTTTCATCGGTGGTTCCTGTACTCAgGGTCCTGGCATGGTGGTCGACAACGAACTGAAAAATCCAATCAGATCTCACCACGATCTCGAGAAAGACAATGCACCGTACGTGAGGAAAGCTTGCAAGCATTATGAAACGCTGGCCAATAGAGCGGCCGAGAATGGTCACGTGATTGATATATTCTCATGCGCGTTGGATCAGACAGGTCTTTATGAGATGAAATATTGTCCAAATTTTACTGGTGGCCACATGGTGATGGGCGACTCCTTCAACACAGCTCTATTTAAACAGACGTTCcaaagaatgttttcaaaggACGTGCGTGGTGAATACAGAATGGCGTTTGGAGGAACGTTGGAAGTAAAGACATCAAAAGAACTGAATGTTTCTGGTTGTATTGGACCGTGTATATCACTGGATAGAAAAGGACCTAATGTCTCGGAAACAgAAATTGGTGTTGGTGGCACGTCAGGGTGGAAACTTTGTGGGTTCGATTCATCAACGACGGTAGCTGTTTTCCTTGAAATAGTAAACCAAcATACCGCTCCAGTACCTCAGGGCTCGAGAGGTTgcgtacaattcataacacaATACCAACACTCCAGCGGTCAGCGAAGAATACGTGTTACGACATGCGCAAGAAATTGGGTCGATGCACAAAGTTTAGGACACGTTTCTCTAGGCTTCGACCAGGAGGCGTCGTGTGTTATGATGAGTCGTATAGCTGTATTCCGCGCTGAAACAGACGAAGGACCAGACGTTCTCAGATGGCTGGACAGAATGTTAATCAGACTGTGTCAGAAGTTCGGAGAATTTAACAAAGAAGATCCGAGCTCGTTCCGTTTAGCCGAAAATTTCACACTATATCCTCAGTTCATGTTCCACTTACGACGTTCACAGTTTCTACAATACTTCAATAACAGTCCAGATGAAACTTCATATTACAGACATATCCTAAATCGTGAAGATGTCGTGCACTCGCTCATTATGATACAACCCATTCTTTATTCTTATACATTCCATGGGCCACCTGAGCCTGTGTTATTGGACAGCAGCAGTATACAAACAGATCGTATTCTACTACTCGATACATTCTTCCAACTGTTGATCTATCATGGCGAGACAATTGACCAGTGGAAAAAACTGGGCTATCAAAACGACCCGCAGCATGAGAGTTTCCGTCAATTGTTGCAAGCGCCTAAAGATGACGCGCAAGAAATCCTGCAGACACGATTCCCCATGCCTCGTTACATCGACACACATCACGGTGGAAGTCAGGCGCGTTTCTTGTTATCGAAAGTGAACCCATCGCAGACGCACAACAACATGTATGCGTGGGGACAAGATGCCGGTGGGGCACCTGTGTTGACCGATGACGTCAGCTTGCAAGTGTTCATGGATCACCTGAAGAAACTTGCCGTTTCGAACACGTCCTAA

Transcript

ENSAPQT00000040426

GGAAAATTGGCTACCGCTGTACGAAAATACCGTGGATACCGCGGAAGACATTTTTCAGAAAGAGAATTTTGTGGAAACACAGCAGTGGGAAATTTGCGAACGATTCTTGCGCATGTCCGTTTCAGACAACGACGTGGctgatttgatttcttcttgtttttctttggaaatatatcaagaaaaattgcataaAGATGGCTACTTATCAGGAATTTATACAGCAGAACGAAGATAGAGACGGTGTGCGTTTCAGTTGGAATGTCTGGCCGTCTAGCCGGCTGGAGGCGACCAGAATGGTTGTTCCGGTAGGGTGTATGTACACACCTCTGAAGGAGAGACCAGACCTGCCTCCGATATGCTACGATCCTGTTGTCTGTAGTCGCAGCAGTTGCAAAGCCATTTTAAATCTGTTCTGtcAAGTGGATTACAGAGCAAAACTGTGGCATTGCAATTTCTGCTTCCAGAGAAATGCTTTCCCTCCTCAATATGCTGGCATCAGTGACCAACATCAACCAGCTGAACTTATTCCTCAATTTTCCACCATAGAGTACACATTGCAGCGTGGCAATCCGGGACCATTGATATTCTTGCTTGTTGTTGATACTTGCATGGACGAGGAGGATCTACAGGCCGTCAAGGAATCTCTACAAATGTCTTTGAGTCTGATGCCGCCAAATGCCCTGGTTGGTTTGATCACGTTTGGAAAGATGGTGCAAGTTCACGAATTGGGATGTGAAGGCTGCTCGAAGAGTTATGTTTTCCGAGGCACGAAGGATTTGAATTCAAAACAGATACAGCAAATGCTAGGACTTGGTGCTGCTGCTCGCCAACCAAACGCTCAAGCTCCTGCTGCTGGTCGTGGACAAATGCCATCGCAAGGCAGCGATATTTTCAACAGaTTTTTACAACCGGTGCATAAATGTGACATGAGTCTGACAGATTTACTGGGGGAACTTCAGCGAGATCCTTGGCCTGTTAGTACAGGAAATCGACCACTGAGATCGACTGGTGTGGCCATGTCTATTGCAGTTGGGCTGCTTGAGTGCACGTATCCAAACACTGGAGCCAGAATCATGACTTTCATCGGTGGTTCCTGTACTCAgGGTCCTGGCATGGTGGTCGACAACGAACTGAAAAATCCAATCAGATCTCACCACGATCTCGAGAAAGACAATGCACCGTACGTGAGGAAAGCTTGCAAGCATTATGAAACGCTGGCCAATAGAGCGGCCGAGAATGGTCACGTGATTGATATATTCTCATGCGCGTTGGATCAGACAGGTCTTTATGAGATGAAATATTGTCCAAATTTTACTGGTGGCCACATGGTGATGGGCGACTCCTTCAACACAGCTCTATTTAAACAGACGTTCcaaagaatgttttcaaaggACGTGCGTGGTGAATACAGAATGGCGTTTGGAGGAACGTTGGAAGTAAAGACATCAAAAGAACTGAATGTTTCTGGTTGTATTGGACCGTGTATATCACTGGATAGAAAAGGACCTAATGTCTCGGAAACAgAAATTGGTGTTGGTGGCACGTCAGGGTGGAAACTTTGTGGGTTCGATTCATCAACGACGGTAGCTGTTTTCCTTGAAATAGTAAACCAAcATACCGCTCCAGTACCTCAGGGCTCGAGAGGTTgcgtacaattcataacacaATACCAACACTCCAGCGGTCAGCGAAGAATACGTGTTACGACATGCGCAAGAAATTGGGTCGATGCACAAAGTTTAGGACACGTTTCTCTAGGCTTCGACCAGGAGGCGTCGTGTGTTATGATGAGTCGTATAGCTGTATTCCGCGCTGAAACAGACGAAGGACCAGACGTTCTCAGATGGCTGGACAGAATGTTAATCAGACTGTGTCAGAAGTTCGGAGAATTTAACAAAGAAGATCCGAGCTCGTTCCGTTTAGCCGAAAATTTCACACTATATCCTCAGTTCATGTTCCACTTACGACGTTCACAGTTTCTACAATACTTCAATAACAGTCCAGATGAAACTTCATATTACAGACATATCCTAAATCGTGAAGATGTCGTGCACTCGCTCATTATGATACAACCCATTCTTTATTCTTATACATTCCATGGGCCACCTGAGCCTGTGTTATTGGACAGCAGCAGTATACAAACAGATCGTATTCTACTACTCGATACATTCTTCCAACTGTTGATCTATCATGGCGAGACAATTGACCAGTGGAAAAAACTGGGCTATCAAAACGACCCGCAGCATGAGAGTTTCCGTCAATTGTTGCAAGCGCCTAAAGATGACGCGCAAGAAATCCTGCAGACACGATTCCCCATGCCTCGTTACATCGACACACATCACGGTGGAAGTCAGGCGCGTTTCTTGTTATCGAAAGTGAACCCATCGCAGACGCACAACAACATGTATGCGTGGGGACAAGATGCCGGTGGGGCACCTGTGTTGACCGATGACGTCAGCTTGCAAGTGTTCATGGATCACCTGAAGAAACTTGCCGTTTCGAACACGTCCTAATGAACCCAAACCCGATTTTATGTTGCTTTATATGTTATTTTTCCCTTTATGTTTACGCTTTACAAAGAAAGCGcgatttataaaaaatattaagtCTATGATGAGAAGAGAattataatgaaataaaagtattttaattttcgTGGTAGGTGTCACATTCCTGCCCCCCACCCC

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D662	Protein transport protein Sec23B OS=Mus musculus OX=10090 GN=Sec23b PE=1 SV=1
Q3SZN2	Protein transport protein Sec23B OS=Bos taurus OX=9913 GN=SEC23B PE=2 SV=1
Q15436	Protein transport protein Sec23A OS=Homo sapiens OX=9606 GN=SEC23A PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005212 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04810 all species →	zf-Sec23_Sec24	Sec23/Sec24 zinc finger	Domain	Interproscan
PF04815 all species →	Sec23_helical	Sec23/Sec24 helical domain	Domain	Interproscan
PF08033 all species →	Sec23_BS	Sec23/Sec24 beta-sandwich domain	Domain	Interproscan
PF04811 all species →	Sec23_trunk	Sec23/Sec24 trunk domain	Domain	Interproscan
PF00626 all species →	Gelsolin	Gelsolin repeat	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029006 all species →	Homologous_superfamily	ADF-H/Gelsolin-like domain superfamily	Interproscan
IPR037364 all species →	Family	Protein transport protein Sec23	Interproscan
IPR006895 all species →	Domain	Zinc finger, Sec23/Sec24-type	Interproscan
IPR037550 all species →	Domain	Sec23, C-terminal	Interproscan
IPR006900 all species →	Domain	Sec23/Sec24, helical domain	Interproscan
IPR012990 all species →	Domain	Sec23/Sec24 beta-sandwich	Interproscan
IPR006896 all species →	Domain	Sec23/Sec24, trunk domain	Interproscan
IPR036174 all species →	Homologous_superfamily	Zinc finger, Sec23/Sec24-type superfamily	Interproscan
IPR036180 all species →	Homologous_superfamily	Gelsolin-like domain superfamily	Interproscan
IPR036175 all species →	Homologous_superfamily	Sec23/Sec24 helical domain superfamily	Interproscan
IPR036465 all species →	Homologous_superfamily	von Willebrand factor A-like domain superfamily	Interproscan
IPR007123 all species →	Domain	Gelsolin-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11141 all species →	PROTEIN TRANSPORT PROTEIN SEC23	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005096 all species →	Molecular Function	GTPase activator activity	Interproscan
GO:0030127 all species →	Cellular Component	COPII vesicle coat	Interproscan
GO:0070971 all species →	Cellular Component	endoplasmic reticulum exit site	Interproscan
GO:0090110 all species →	Biological Process	COPII-coated vesicle cargo loading	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0006888 all species →	Biological Process	endoplasmic reticulum to Golgi vesicle-mediated transport	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan
GO:0090114 all species →	Biological Process	COPII-coated vesicle budding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14006	SEC23; protein transport protein SEC23	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.