Gene detail

Detailed information of ENSAPQP00000036292.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB4007237.1, Endoribonuclease Dicer [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000040639

ATTATAAAGCTTATTGAACATCTTGCACAAGAGAATGGGATCCTTAAACCTTTCTCACAGGGAGGTAAAAGGACATTCTTTCTCGTCAACAGTGTTCCCTTAGTTTTCCAACAAGCTGAAGCTATTAAGTCACATACAGCACTCCAGGTGAAAGCATACTGTGGTGAAATGGGTGTGGACTATTGGACAAGGGATCAATGGCTGCAAGAATTTGAAGAACATCATGTTTTAGTGATGACCCATCAGATTTATCTTGATCTTATACAGCATGCTAAGCATGGATTCAATTTATCTCAGGCAAATTTGTTAGTGTTTGATGAATGCCATCATGCCAATAAAAATCATCCATTTAAGAAGATCATGGATTGTTTTGGAGATGTCCGTAATGGTCAAGCTCTTCCTAAGGTGCTGGGACTTACTGCGTCTGTCGTTGGAAAGAAGGTGAAATCACATCAGATCGGGaatgaaattagaaatttgGAACGAACAATGAGAAGTGTTTGTAAAACAGCAAGTGACtcaaatattgttgaaaaatatGGTGCAAAGCCTCGAGAAGTTATGAAACCATTTTCATCATCAAATCATCTAGATGCTGTTGCAGCTTATCTGGAGAATGAATTCTGTTCAGTTTTGAAGCCATTGAAATCATTTTTAGATGATGTTAAATTACTAAGAGATAGGAGTGGTTCTGAGGAAATTATTAAGAGAGAATTAGATGTTGCAAAGCGTGCAGTTCTTGAGTGTTGCTCAGCACTGGATGATATTGGTATTTGGGCAGCATATGAGGTGTCTCTGATGTTAGTGAGTGATTTAGGTCTCTTCTGGTTTGTCATCCTGTACAAAGACTGCCAGCTTTTGCTTTTGAAACACCTTGATAATTTAATCATTTTTACCCTCACTATCCCTCATTTAGTGGAGCAAAAGATTTGTTCCATTGTGTTTGTTCAACGACGCTATGCAGCTTGTGTGTTGAGTAAACTGATTAATAATTTGGCATCCACTACCTCTGAGTACCAGCATTTGAACTCAAACTACGTTACTGGTCATGGCTCTGAACTCTGGGGAGTGTCTGAAACTGAAATGAACTTCAAAAAACAACAGGAAATACTGCAAGACTTTCGAAGCGAAAAGTTTAATGTCCTTGTTGGAACAAGTGTTGTAGAAGAAGGTGTGGATATCCCAAAATGTAACCTCGTTGTCATGTTTGATTTTCCACAAAATTATCGCGCGTTCGTACAGTCTCGCGGCCGTGGTAGAGCAAAAGACGCAACATATGTAATGCTGGTGGAGAGGAGTGAGTTTGGAGAACGCAAGTACTGTATGTCAATCATGATTAATTGGATCATTAATTGGTTTTTTAGATATTGTTCAAAACTTCCTTGTGACAGATTTACCAGCCTCAAACCAATGTTTTCAACTTGCGTTCTGAATGATGATGAATATCAATCAATGGCAAGCAAGAAAGAAGCACTTCAGGCCGCAGCTCTGGAGGCGTGTATTAGATTACACAGATGTCATGCTCTGGACGATCATCTTCTCCCCGTGAAGAGCAGCAGTTCAGACAGCGAAACTGAAACTGATCAAGTTGACGGCTCCGCTTCAAAACACAAAACTGGAACAAAGAAACGACAACGTCTCCATTCAAGAAAGGAATCAAGTCAAATCTATGGCCGATTGTCTACGGATGGTACGAAGAAAATGTATCTGCATGTCATCAATATGACGTTTGATGAATTGCCACCTTGTTTTTTCTACAACGACATTGGAAAGCTACAAGTTACTCTTGAATGTTGTGAGTCAATTGGACCGGCGCTCAGTGAAGAGCAACGCAATCTTGTTGACTGGTTTCATAACTTCATCTTCACTGAAACGTTGCAATTTCGTGCCGGTGCTCTTTCGAAAAATGGTTGTCGTGTGGTGTTATTACACGAGGGCAGACAATCTGTCAACTTTGAGCAAATGCAACAATTACAGATGAACTCTTCGAAACGCGACGGCAAGTTTAGTTCCGACATCAATCTGTCAGATTCTGTTGTGATCGAAGGTTACCTGAGAAGCGCTGCTCATCAAAGTCCTGGACATTACATGGTGATCTCGTCTCATGGGACACAACTGCGAGCCGTCCATCACACACGCAATCTGGATTGTCGCCGCTCAAGGGATTACACTGGAGCAGCAGGAAAGTCCCGCATTTTAGTACGGGACCCGAAATGTTTAGAATTTTACAAAAGTCCACAATCACTGACATTTCGTGCACTCTTCTTACCGGCGATATTATACCGTGTGGATAGCCTCGTTTCAATTATACAACTACAGAATACGATATCGACCAGAATGGCTGATTGTGCTGCATGTGATGTGCGAGAAATTCCACGAAAGAGGCTGAGAACAAGCTCTAGTCAAACGCCAAGAACACCGTCAACATTGGAGCAATATTTCGGTGCATTCGACATTTCTAAGAAAATCCCACCCTTCCAGTTACTGGAAGCAGTCACCTGCGCAAGCTCAGCGGAAGATTTTAATCTCGAGAGGCTGGAAATGCTTGGTGATTCATTTCTCAAGATGGCGGTTAGTATCCATGTTTATTGGCACAAAGATCACAAGGACGAAGGTAAACTTACAAAATATCGCATACGACAGATCTCCAACAAAAACCTCTTCAATCTAGCAATGAAAAAAGATCTTCCCAAATACATCAAGTACTCGACCTTCTCCAAAGAAACATGGCGACCACCAGGCTTTACTACACCTCATCGCCCCACTTCTCATGACGTCACTTTTGATGCTGAGGTTAAccgtgatgacgtcatatcacaAAAGATCCCGGATAAGAGTGTTGCAGATAGTATGGAGGCGCTTATTGGAGCACATTTTATGCATTGTGGATACATCGGGGCATTGAGGTTCATGAATTGGCTTGGTGTAGATGTTTTCTATGACGAACACACCAACGATGGTGGTGAATTGACCAATGGCAATCGTAGAAAGTCTCCCACCCCGCGATGTCCCTCTAAGTATGCAAACTATCCCGTGGCAACCTTGGACGTCCCTGTAGGTGAGGAAAGTGCACGATATGAAGAGATCTTAGAAAAACAGACGAAGATAATGGCTTCATTTGAGAAGATGATTGGTtatagttttaaaaataagGTTTTGTTACTGGAAGCATTTACTCACCCGACATACAGTGATAACACCATCACTGGCTCATACCAACGTCTCGAGTTTTTGGGTGATGCTATTCTTGACTTCCTTGTTACGCAACACATCTATAACAACTGTAAGAAAGATTTGAAACCTGGTGAACTGACTGACTTACGCTCTGCTCTGGTGAACAACAATATCTTTGCTGTCATTGCTGTACAGAACAACTATCACCAGTATTTAAAGGAGCATTCTCCGCACTTTGACTGTGGTGATGCTGAGTGTATTGAAGCTCCTAAGCCTCTGGGTGATGTATTTGAATCTGTTGCTGGCGCGATATTTTTGGATAGTGGCCTGGATATCTTTGAAGTGTGGAGAGTTTGCTACCCAATGCTCGAGAAGTTCATTGATGAATATTCTGCGAATGTGCCCAAAAGTCCAGTGAGAAGCAttaaagaaaaagatgaaatagCTGACCATGCGAAGATACTAGAGGATGATAGAGTCTCGTGTGTTCTGATCTTTAAAGGCCAGCAGTTTACTGGCATTGGAAGAAATAAGCGCAATGCCCGACTTTCTGCTGCTTACAAAGCATTGAAATCAACGGAGGAAGATCATGTGGAGAACTGA

Transcript

ENSAPQT00000040639

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3EBC8	Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana OX=3702 GN=At3g03300 PE=1 SV=2
Q10HL3	Endoribonuclease Dicer homolog 2a OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2A PE=2 SV=1
Q69LX2	Endoribonuclease Dicer homolog 2b OS=Oryza sativa subsp. japonica OX=39947 GN=DCL2B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001530 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00636 all species →	Ribonuclease_3	Ribonuclease III domain	Family	Interproscan
PF20932 all species →	Dicer_dsRBD	Dicer, dsRNA-binding domain	Domain	Interproscan
PF03368 all species →	Dicer_dimer	Dicer dimerisation domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR000999 all species →	Domain	Ribonuclease III domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036389 all species →	Homologous_superfamily	Ribonuclease III, endonuclease domain superfamily	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR044441 all species →	Domain	Dicer, double-stranded RNA-binding domain	Interproscan
IPR005034 all species →	Domain	Dicer dimerisation domain	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan
IPR038248 all species →	Homologous_superfamily	Dicer dimerisation domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14950 all species →	DICER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004525 all species →	Molecular Function	ribonuclease III activity	Interproscan
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0030422 all species →	Biological Process	siRNA processing	Interproscan
GO:0031054 all species →	Biological Process	pre-miRNA processing	Interproscan
GO:0016891 all species →	Molecular Function	RNA endonuclease activity, producing 5'-phosphomonoesters	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016442 all species →	Cellular Component	RISC complex	Interproscan
GO:0090501 all species →	Biological Process	obsolete RNA phosphodiester bond hydrolysis	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11592	DICER1, DCR1; endoribonuclease Dicer	EC:3.1.26.-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.