Gene detail

Detailed information of ENSAPQP00000036630.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3983774.1, Smaug homolog 1-like isoform X2 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000041043

AGCTATTTGTGTGGGAGCCATATTTACACAAAGAGGCCAAAAACGTACTTAGGTCACAAAAATTGGCGAGCGTAGCTACACGGCCCACGTCTATTCTTCAAGCCCACGCACAGAATGCCATATAGAAGCTTCAGCTCGCGTCAGCTGCACGGCATACAGTAATTGTGAATTTCGGGCAAGCAAGCACATTCAGCATCCCGGCTTTCGCTTCGAAAAGCATCGGTTTTAGTGTGCGAATTTGTTGTCGATCGATTCTGGAAACGCTCTACCCCCAGGGAGGAATGGTTTATTGGACAAAAGgtGGAACAAAAACCGCTTCTTCACGCGAAATCGATTGGCGTTCGAAAATGAGACCCGCATCGGCGAATGCGTTTCGAAATCAAGTTCACACAATTCAAACGTGGTTTACAGAATGGAACGAGTGCGAGAGGACGATTGCCTTGTACTCACTGCTCCGACAGATGACACCGATTCACGCAAGGTTTTTGTCCGTCGTTATGGAGCACACGTTTCGCGACCAAGTTTACAAGACACAAATGTACGAGGATCAGGCGAATGACAAAGAATTTCTGATTCGTCTGAGTTCAAAACCTCGAGATGAAGTAGTGAAACAACTGCTAGTCCATTTACCCCTCCTGCAACCCGGCAACCATGCCGCTAGGGAGGAGTACCTCAACATCCTGCCCAACGTGCTGTCCCACTCCCACAGCAAAGGCATACAGGAGGAGGAATGTCGCCAGCTCCTATCCCTTGCCCTCGTTCACCCCGCCTTCTCCGCGGACGAGCGTTCCCGCCTGCAAGAATGGCTGGAAATTCTCAACGATAAATCCGTGGGCGGATTCTATGACTCGAAAATCAACGAGTTCCCCCAGGCAGAAAACGTCTCCCGACGTATGGATGGCTGGCAAAGACATCAAAGACTTGTGAAGAAAGATTCTGGAATAGGAGGCTCCTTCGAATATCACTTCAACCCCCCAGGTCTTCCGCCCACCGCGCACCCGAATCCCCCCATAGGGCATCCGAAGATTCAAAAGACCCAAAGCCTCCAGCCTGACAGAATATGCAATGGTGTCGAGGATGTGATCAGCGACAGTCCGGAAGTGTTCAATCGTCCCGGACGATCCCTGTCGTTCCCCGTGGATCCACAGAAGTTCAGTAAGATCCCGTTGTCCCCCCAGTCGTCATTCGAGAGCGAAACGGACGAAGCAAATAGCGCTGCGAAAATGTCCAACTTTCCAGAAAATCCCAATCCTGGAATGAAAGATTACATACTGTGGTTAAAAGGTCTGAGACTGCATAAATATTACCCGCTATTCTCAAAGATAAATTACGACGATATGTTTCGGTTTACCGAAAAGGAACTTGAATCGAAGaaCGTCACAAAAGGCGCAATGACGAAAATCTTATTGAGTATTTCAAAACTTACAGAAAGACCTCATTTATTATCGTGTCTTGAAAAGGAAGTTCACGAAGAAGGAAAGCTACCAAATGTGTTGGAATCGCTAAAAAACATCCTTCAAACGCCGATCAAGCCATTTGCACCAGTGCATGATCCAGATTTGGCAGAAGGAAATGCACCTTTGCCCAGCCCACACCCCGACGACTTGCCCTCACAGCTTACCAAAGTCATCGGAAAAGCCTGCACCCAACTTTTGGTTTCCAAACCAAACGATGACAATTTTGCCGTGTATATCAGTCTTCTCGAGAAAGCTTTGAACAAAGAGGCATTTACAGCTCAGCAAAAGAAACGCCTTCAGTCATGGAAGCAACAGTGCCATATGTCCGCCAAACGTTTCAACCTACGTCGAGGGTCGCAGGACAGAGGACGTTGGCCATTCCATGTGGGCGAGGCGTCGACTATTGGAGGCAATGTGAAACGTCAGCGCGGCTCGCAACGAAGCCTCAATAAACTAGTGGCTACAAACAGCAACAGTCACGGAGGCGCATCCCTAGGCCCTATGAGGAGTAACACTACCGACGGATATTATAAACCAAAAGCACAGCTTCGCCATCACGCCCTGGTGTCTCGCACGAAATCAGCTCCAATCCCTGCCTCGAAACAACGCCAGGCAATGTTGGGCCTCACACATCAAGCCTCGATTGAAAGTGTCGAAGGTAGCTTGGAATCGCTGTGTTTAAGTATGACTGAACATGCTTTAGCAGacAATACAGACTGCACATAATTGACGAATGATGCAATTGTTCACGTGACACGTCAACTGGCAGGCTGATATCCAATATCCTTGTCAGATTTTTTTCCGATTTGTGATTGTTGTGTATGTCTTCGCTCTGGCGACCTCGTGGAGGTCACTTAATCGTTTTAGACTTTAGTATGAGCTTTAGTATGTGAAATGTGCATAGAGAGATTGATATCGTGTTATGTGGCTTTAACAAAACCTGAAGGCAATGAAACCGCTTCGAACATTCAGAGTACATTTAGTGTTTAGTGATTGAAAAACAACCATTTGACGGACTGGTCTGTCATTTGTATGGTTTCATCAAACATCAAACTTAGTTTCTGCTTATATTCTAAGTACAGTAATGAGCAGTTTTTAAAAATCAGGTTTTTCGAACTCAAATTCTTCATGAAGAAAATTTCAGCTCAAAATGAAAGTCAGATATTGTGGTGATACAGAATTACACTTCTGCTACAGTGTTCGTATACATTATAatgatttattattcattattaaaCTTCCGCGATTTCGTATTGACAAAGGCCAATAGGTTGTCTAAAAAAACTTTTGATGTTAGAGCCACATACACATTATCGTATAGTTTGTCCTCGTGCACGTGTTATGTGTGTCGGACGTTTGTGTCGCTCTAGTTATTTAGTTGTAGTTTTGTTGTTATAGTTAATGCACAGTCGCATATTGTTCACGTGGCCTCGGCTCGATGCCGCTGGTCCTTGTGCTTGAGTGTTCGCTAAAATCAGAGCGAGCCCATAAGTATAATATTTAAACCGCCATTTTACTACAGCATGACTGGTACTTCATGTTGGTTATCGCGTAATGATCCGGCGTTGACGCATTGGAATATTCGTTAGTAGTCTGACCTCACAGAAAAAATGCTACAATTATTCAATCGCTCGAAACTTGTAcccgaacaaataaaaaagttTGCGAGGAAATTGGAAAAATCGACAACGAATTAGGCCAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80XS6	Protein Smaug homolog 2 OS=Mus musculus OX=10090 GN=Samd4b PE=1 SV=1
Q5PRF9	Protein Smaug homolog 2 OS=Homo sapiens OX=9606 GN=SAMD4B PE=1 SV=1
Q5FWP2	Protein Smaug homolog 1 OS=Xenopus laevis OX=8355 GN=samd4a PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003202 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00536 all species →	SAM_1	SAM domain (Sterile alpha motif)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037093 all species →	Homologous_superfamily	Smaug, PHAT domain superfamily	Interproscan
IPR013761 all species →	Homologous_superfamily	Sterile alpha motif/pointed domain superfamily	Interproscan
IPR001660 all species →	Domain	Sterile alpha motif domain	Interproscan
IPR050897 all species →	Family	SMAUG/VTS1 RNA-binding	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12515 all species →	STERILE ALPHA MOTIF DOMAIN CONTAINING PROTEIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0017148 all species →	Biological Process	negative regulation of translation	Interproscan
GO:0030371 all species →	Molecular Function	translation repressor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000289 all species →	Biological Process	nuclear-transcribed mRNA poly(A) tail shortening	Interproscan
GO:0000932 all species →	Cellular Component	P-body	Interproscan
GO:0003729 all species →	Molecular Function	mRNA binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000036630.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.