Gene detail

Detailed information of ENSAPQP00000036772.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3981111.1, tryptophan--tRNA ligase, cytoplasmic [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000041203

ATGCCGGGCGTTAATAAGTACGATGTGCCTTTGATTTTGCCCGGCTTGCGTAAAGAAGAGTCCATCTTTCAAATGGTCAACGCTTTGGAGTATTTGCAGCAGGTTTCCAGCGATGTTTTTGCGAAAATCGAGAAGAGAGTTGCGGAGAATCGAGATCGAATCGCGGCCATTGACAAGCGGGCCAACGTCGCGATGGCGAAAATCGAAAAGATCCGCGGCAGCAGGAAAGCGATCAGGGTGTTCTCCAGTGCAAAATACCCCGCGCCAGAGAAACTAGAGCAGTACACGTCCCTGCACACTTGCGATGGGCTCGATCAAAACGCTCTACCCGGTGTCGACCAAAATTACCACGTAGGAAGCAAGTTCCCCCAAGCAAACCACGACAGCCTCAAGGAAAAACTGCAATTCTACAATGTGCAGTTGAACAAGTCTCAACGAAGGACCGACAGGGATGATCAGGGGTTGGGTGGCTTACCCAAAGATATCTCATCAATCAGTGCCCTGCTTTTGTTCAACACCACCGAAAATCCTTACAAGAAATACGTCGTTCTGGATCCCCTGGCTGGAGCCATCACAAAGACCAGGAAAGGCTTGGACGAAGAGGATGACAACCTCGCTGCTGCTCCTGTTACAATCACAAACCGCGAGGAGATGGACCTGCTCGGGTTGACCAACTATTTTTACGTTCCAAATCTCGGCGACGTGCCAGAACTCGACGTGCCAGTTCACCTTCCTGACTTGCCCGGAATTGCTGATGATCTTGCTTGGAGTGCTGATCTTGGTCCCTCAATAGCACCATCGGTCCCTGGATCCAATGTTCCCGAATTGCCTGAACTGATTCCGGAAGCACCAGCGCCTGCATTTCAAGGAGTTGAAGATGATACACAGTCATCCCTTTATACTCCGCCACCACCACCCCCGCCTGAACCTGAAGGTCCCCCACCACCCCCTCCTCCACCCCCACCACCTCAGCCCATGGAGGTCGAAGGCACTGCACCCCCTGCTCCAGCTCCAGCAGAAGTTGTCCAACCCGCAAGTGGCGGGGGTGCTGATGGGGGCCGGGCCGACCTGATGGCGGCCATCCGAAATGCGGGCGGGGCAGGCCAGGCGAAACTAAAGAACGCCAAAGAGCGAAAGCAGAAAAAACGCGCCGAAAAAGAAGCCCCAAGTAGCGGCGGCGGTGACCTTATGGGCGATCTTTTTGCGAAACTGCAGATGAGGAGGAAGGGTATTTCAGGATCAAGAGGGGATAAAGGGGGTGAAGACACTGGTGGAGGGTCGGCTATGGATAAAATATCCTCAATGATCCCTCCGCCCAGCAGCGCAAATACGTCGGGACTTGCTAATCGTGTAGTTTTAGAATGCAAACCTCTctGGAGCGACGAACAAATTGTGAACATTGAGACTGTCATTGCAGCTGATAACAAGGGGATTGATTACGATAAACTTATAAAACAATTTGGCAGCCAGAAGATTGAGGAAAGTCATATTGAACGCATTGCTAGTCTCAGCGGAAAACCTGTGcaccattttttaaaacgtGGTATATTTTTCTCTCAAAGagaTTTAAAAGTGATTTTAGATGCAATTGAAGCAAagaagaaattttatttatatactgGCAGGGGTCCATCTTCTGAAGCAATGCATTTGGGACATTTAattccatttatttttacaaaATACTTACAAGATGCATTCGATATCCCATTGGTGATTCAATTAACTGATGACGAGAAGTTTTTGTGGAAGAATTTAAAACTAGAAGAAGCTCACAGGCTTGCATATGAGAATACAAAAGACATCATTGCCTGTGGCTTTGATGTAAACAAGACATTTATATTTTCTGATCTTGATTTTGTGGGTGGCTGCACAGAGTTTTATAAGAATGTTGTGAGAATTCAAAAATGTGTCACATTTAACCAAGTTAGATCAATATTTGGTTTCACAGATAGTGACCCCATAGGTAAAATTTCTTTTCCTGCTATACAAGCAGCTCCTGCATTTAGCAATTCATTTCCTCAGATATTTGGCGAGAAACATGATGTTCCATGTCTAATCCCTTGTGCTATTGACCAGGATCCATATTTCCGTATGACGCGGGATGTGGCTCCAAGATTGGGGTATCCAAAACCCTCACTTCTCCACTCTACCTTCTTCCCGGCTTTGCAGGGAGCAAAGACAAAGATGAGTGCGAGTGATCCAAATTCATCCATCTTTTTGACCGACACTCCAGCACAGATAAAGAAAAAGGTGGGAGAATAA

Transcript

ENSAPQT00000041203

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P23381	Tryptophan--tRNA ligase, cytoplasmic OS=Homo sapiens OX=9606 GN=WARS1 PE=1 SV=2
P17248	Tryptophan--tRNA ligase, cytoplasmic OS=Bos taurus OX=9913 GN=WARS1 PE=1 SV=3
Q5R4J1	Tryptophan--tRNA ligase, cytoplasmic OS=Pongo abelii OX=9601 GN=WARS1 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006061 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00579 all species →	tRNA-synt_1b	tRNA synthetases class I (W and Y)	Family	Interproscan
PF11945 all species →	WASH_WAHD	WAHD domain of WASH complex	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001412 all species →	Conserved_site	Aminoacyl-tRNA synthetase, class I, conserved site	Interproscan
IPR002306 all species →	Family	Tryptophan-tRNA ligase	Interproscan
IPR003124 all species →	Domain	WH2 domain	Interproscan
IPR014729 all species →	Homologous_superfamily	Rossmann-like alpha/beta/alpha sandwich fold	Interproscan
IPR002305 all species →	Family	Aminoacyl-tRNA synthetase, class Ic	Interproscan
IPR021854 all species →	Domain	WASH1, WAHD domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10055 all species →	TRYPTOPHANYL-TRNA SYNTHETASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000166 all species →	Molecular Function	nucleotide binding	Interproscan
GO:0004812 all species →	Molecular Function	aminoacyl-tRNA ligase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006418 all species →	Biological Process	tRNA aminoacylation for protein translation	Interproscan
GO:0004830 all species →	Molecular Function	tryptophan-tRNA ligase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006436 all species →	Biological Process	tryptophanyl-tRNA aminoacylation	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000036772.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.