Gene detail

Detailed information of ENSAPQP00000036928.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3989141.1, tRNA pseudouridine synthase Pus10 isoform X1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000041376

atggCGGACACAAAAATAAGCGTAGATTCAAAAGTATTAGCAATTTTACACGAGGAATTAAAAGACGATATTAAAAAGAAGGTAAAGGAAAAAGGTTGGAATGAGGACGAAACCGAGAACGTTATAAGTGGACTATTAAAGCTTTATAAAGAAACAGTTGAACTAGCACTTAGAGAAAATGTTGTTGCCAATCAAGGAGAAACTCCTACTTCAACTAGTAAAGTCAAGCAAGAAATGGAAACAGTGGACAAAGAAAGAGCTGCAGAAGTGAATGAGATGTGTGCAAAATCTGAGGAACTTCTTACTTGTACAATAAAGAAACGTAAAACATATCCACAGAAAGTCAAAGAAAGCCTTCATATGAAACATGATGCAGATTTAATGGACTTGCAAAAGCTTGAAGATAAAGTAAGACAAGATGAGGGCTATGTTGCAAGCACTGACCTAAAAgcacaatttgatttgaatgcAGAATGTGAAAGTAGTTGGTCAAGATTAAAGCCTGCTTGTCAAGATCACACTCAATTTTCAAAGTTGCTCTCagagaagaaagaaaaattggaAAGATACAACACTGTTGCAAAAATGAAGTTGAAAATGCAAGGCAGCGAATTGCATAGAGCGCTTTTTAGCAAGAGAAAACTTCCTAGTTCGTTTGATTCAATACTTGAAACCCCAGGCAAGGAACTAAAGCTAGATGAAACTCTAACTGATTCTGACAACAATATATTATCAAAAGTTCAACCACACTTTTCTGTTCCCAATCCTTTAACATGTTCTTCAATCTTGAAGGGAATTGTGAATCATGTAAAGAAGGAGTATGGTTACTCACCAAGCATAGAAAATCCACCAGATTCTGGTGATGCCATTTGTGTTACATGCCTGGGGCTTCTACAACCACATTCTGCATCTACTTTGGTCAATCAGGTTGTTATTCATAGTTTCCTCCAAAGATATCTCAAGATATCAAAAAtatctccccccccccccctatacAAATTGCATTCAATGTGCTTATATCTTCAGGAAAATTTTAGTTCAATTTACCCAGAGCAGATAAAGCCAGATCAGATTCTGCGTCTCAAAGATTGTCTCAAGTTTGTATATGGTCCTCGGTTGGAACAAAACTTGGATActgaatttagtaaaatgAGTCCATTCACCATTACTGTAATGCTTAATCACTCTGAGGCCATGAAAGAACTAGACTTTCTGAAAGCAGGGAAAAAGATATTAAGGTGCCATCCCAGAAAAAGGCAGAAGGTTTTGGAAAATGAACCAACTGTCACTTCTTCTCAACTTACCAAATGTATTGAAAGTCTCAAAACATGCGAGGAATTCAACAAAGTTGGTTCATGTCCTCCCAAAGTTGTGAAGACCGTCTGTGAAATTACAAAAGTTGAATGTACCAACGCCTCCGTATATCTTGCAGGTCGTTACAACAAATATTCGCGTGTATTATCTCAATCGCCTTGGATAGTAAATAATGAACGAATGACGGAAACTTCGGTGGAGGAATTGATAGCGGAGGAAATAAAGAAAGTTTTCTTGCCTGATGATACGAAGTTCTCTTCCGCTGGTCGAGAAGATGTTGATGTGCGTATGCTTGGTAAAGGTCGACCGTTCATTTTGGAATTAATCAATCCACGGAAGGTAGCGCAAACATCTGAGCAAATCAAGGAACTGCAGGCCAGAATAAATGCAACAACCGAAGATGTCAAGATCAGAGATTTACAAAAGATTACAAGGGACGATTGTTCAAGGTTAAAGGAAGCGGAAAACAGCAAGACGAAATCCTATAGTGCTTTAGTGTACGTTCCAGAAGGAATTAGCGAAGAGGAGTTATCGTTGTTGAATCATTCTAAAgaaattacacttgaCCAAAAGACTCCGTTACGAGTTTTGCACAGACGTCCCTTGGCGAATCGTCCGCGCAAGATTTTGTCCATGTCAACAGAATTCATTGACAATAATCATTTTACGCTACGGTTATGCAGTGAAGCCGGCACATACATCAAGGAATTTGTACACGGGGATTTCGGAAGAACACAGCCAAACTTGTCAACAATTATGAAGAAAGAAACAGACATATTGGAACTCGATGTAGCGTCCGTGGACGTCGATTGGCCTCCATTTCTTGACACTTAA

Transcript

ENSAPQT00000041376

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q3MIT2	tRNA pseudouridine synthase Pus10 OS=Homo sapiens OX=9606 GN=PUS10 PE=1 SV=1
Q9D3U0	tRNA pseudouridine synthase Pus10 OS=Mus musculus OX=10090 GN=Pus10 PE=1 SV=1
Q6ING2	tRNA pseudouridine synthase Pus10 OS=Xenopus laevis OX=8355 GN=pus10 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003642 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21237 all species →	Pus10_N_euk	Eukaryotic Pus10, N-terminal	Domain	Interproscan
PF21238 all species →	Pus10_C	Pus10, C-terminal	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048742 all species →	Domain	Pus10, N-terminal, eukaryotes	Interproscan
IPR039894 all species →	Family	tRNA pseudouridine synthase Pus10-like	Interproscan
IPR020103 all species →	Homologous_superfamily	Pseudouridine synthase, catalytic domain superfamily	Interproscan
IPR048741 all species →	Domain	Pus10-like, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR21568 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009982 all species →	Molecular Function	pseudouridine synthase activity	Interproscan
GO:0031119 all species →	Biological Process	tRNA pseudouridine synthesis	Interproscan
GO:0001522 all species →	Biological Process	pseudouridine synthesis	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0009451 all species →	Biological Process	RNA modification	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000036928.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.