Gene detail

Detailed information of ENSAPQP00000036940.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3999254.1, tyrosine- phosphatase non-receptor type 23-like [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000041391

ATGTACATGTCGAACACATCTGATGAACAGGGCAAATATGGAGAGAAGGTTTGTTGGCTGGAATATGTGCAGCATTTAAATCAGAGCCAGCAAGTGCAGGATGTTGTTCAGTTCATTGCAGACGCTGTCACTCAAAAATTGGATGGTGCGAAGCGTGATAACGATTTCATTTACCATGAGGCGGAACCAGCATCCACTGCTTTGCCTGAGATAAAAGGTGCATCTTTGGTGAAGCCGATTCCTTTTCAACCGTATGATCCTTCAATGGGGAAGGATATCTTCGAGAAGCTTATTCCTATGAAAGCTCACGAATCCTCGTCATTATACAGCGAGGAAAAAGCGAACCTATTGCGTCGTTATGCCAGTATTGTCGGTGAAAAAGACAAAGAATTAAGTACATGGCTCGCTTCAATGCATATTGATGATCTGCTGCGACCTGAAGAAGCGGATAATCTTCCTGCTGACCTGACAACAAAATGCAAGTCGTTGCAGTCCAATCCTGGCGCGATCAAAGAAGCTATGCAAATGCTGACAAAACTGAAGGAAAAAGGTGCCGAACTTGAAAAAACTTTGGTAGAAACACAGAAAGAAATTGTTGATGTTCAAAATGAGAAAAGGACGTTTATGGAGAAGTACAATGTGAAACTTGAGGAAGataaaatgaaagaatattTGGAGGAAGTTAACAGCTACCAACAAAAACATGGAGATGCCAAAAAAGCAAATGATAATCTGGAGAAAGCGTTCGATGCTCACCGTGAAAATTTGGAGCTAATGATGGGACCAGAACAAGCTTTGCATGGAATTTTACCctcgcaaaatattttagattCTCCAATTGAAGACGATGCTGTTCAAAGAATAAGAGATCTTTTGggtaaaattgaaaaaatgaaaacacagAGATCTCAGTTCATGGGCAAATTGAGAGAACAGGTTTGTGTTCATTCACGCTTATTCAAGGAAGAACTTAAGAAACATGACGAATCGTGCGAACTGTTGCAATGTAATCTGGACGCCCAGGAGAAAATCATGAAGTATtcttgtctttgtttatTAATGATAATCTAtataacattttttgcaatttatttatttattaatttgtttgtttgtttatacaGTACCGGGGTCACTTTCTACAATCAACTTGCGGAGATTTTTGAAAAGCGTCGACATGAAATCACAGCTGTTTGTAAAAGCGAAAAGGAAAGACTACAAAAGATCGTGGAAAAAGCGAAGCAAATAAAAGAAGAACGAGAGAGAAATTTGGAGCCCAAAGTTGACGCTGCGTTATCCAATACTATCCCACCAGAAAGACGCAACAATCCTGGCAATCCCCAACAAACCCCTCCTATTGGGTATCAGCAGCCCCCACAAAGCCATACCCCTCAACACCCTTTGTCACATCAAGCTATACCTCATTCGCTTCGTGGTCCTGCTCCGAATCAACCCCCACCCATTCAATCGGGGCACCCGGCTCAGTTCAACCGCCCGCCTTGTCCACCGGGCACTCAACCTGGGATGTCCCAATATATCCCCAGAGTACCCTCAGGAACGTTACTTACCACGAGACCCAGAATGTCCTATCCACACCCCCCATTCCCCGTAACCTCCCAGGAGGGTCCACGCCCACCAACGTCCGCACCATGGCAAGCACCTCTTAGACCAGGCGATGTATCTCCAACTGCAACTGGTAATATAAGATTTCCACCTCCACAGGGGGTCAGACCTCCACCAATTCTACCGCAAGGGCAATCCCTTCCTCCGCAGCAGTACCCCGGGAGACCCCCGTTACCCATGCACACCCCTCAAGGTCAGACCTTTCAACATGGTCAAGTAGGAGCTGGTAGAGGTAACTGGCAACCGCCGCAACATGGCGGGCCACAGTTTAACGTCGGTGCTCCTGACCAGAATGTACCATCACATATCATGCCGCAACGACCTATGGGACCTCAGCAGCCTGTTATCTCCCACCAGCCAAGGCCAGCTGGTCAACAACCCATGCTTCAAAGACCACCATCTGCTGTATTGCCCCCAGTTCAGCAGCGCCAACCCACGCCACAACCACAACAGCTGCCACAGAACCTACCACAACAACCAGCGCGACCAGAGACGCCACCATCTCCGCAAAGAATCCAACAACCTTACCAATCAAAACCACCCTCCTACCAGCAACAGTTCGGAATCGGGTCTAGGCCGCAACTGCAAGGACCCGGGACTCAACACGTGCAGCAAGTACCGCAACAGCAACCAGGACCATATCAGAACCCCGGTGGACACCAAGCACATGGTCAACCAGGTTATGCTGGTCCCAGACCAGGCCAGTACTTTCAGCCCGGACAACAACCCTTGCCCAACCAACAGTCAAGGTTGCAGCAAATACCAACAGCATACAAGCAACAGCCACCAGTGAGAATGCCACCAGCAGGGATGCAGCACCAATTGCCACCAGGTCTCCATCAGGCACCATCACAACACCTACCACCACAGCAGCAGCGCCCAGTAGCTGCACCACAGCAACCATCTGGCCAGTACCATCAACTTGGTCCCTACCAGCAAGGGTTTCCTTACCAGCCACACCAACAGCCTCGTGCAACTCACCAGCAATTGGTTCCCGCGCAAGCCCGCCAACAAGGTCCTCCCCCACATCGACAAGGACCTCCTGCTCATCAACAAGGACCTCCCCCTCATCAACAAGGACCCCGCCTGCAAACTGGGCAACACATACCCGCGGGACAGAACCCACCGCACCTACCATATCACCAGCTACCACCCTCCCAGGGCTCACACAACGTGCCTCCAGCATTAGACCCACAGTCGTATCAAAAACAGCCATTGATGCAAAAGAAATCTTCAGAAAATTTACCTCCTCAGCAACAAGCGGGTCCTTTTCCCTCACACAGCACTCCACCGCAAGAACCATCAGGACAAGAAAAGCTTCCTTATCAAGGCCACCAACATGACAAGCCTGCAAACCCGTCAGCTCAACAGGCAGTCATAAAACAACAATGGCAGCAGCCGCAGTACGGACCGCCCACGTCCCATCAGCACACCATCATTCCACACCAGGAAACGATCAAGACTGTTCCTGAACCTAACATTTCGAAACCTGGGGAGCCCTTCTCTGCATCAGCTTATCCCCATCCCTCGTCAAGTCATAACCTCTCCCAAACACGACAGGAAAACCGATCGAGTCGACAAGATGACCACCCTGGTAACATTGCCAAGCCAACGATGTACCCCTCCCCTAATTCCTCTCCTCAGCTTGGACCAAACGTAAGCTCAAGCTATATTCATCCCACGTCCAGTCATAACTTCCCCCAAGAAAATCAACTGGGGGATAAACTTAGGATTTCGAAACCTGAGGTGCACCCTTCTTCCCAAAATATACCCCCTCAAGACTCGTCGCGTACGAACACCCAGAACCCAAATCCCTCTTACAATACAATGCCGGCATATTTCCCCGCAGTTTCCCGGCAAACATCTCAAGAAAACCAACCGGCCGACAATCTTTCAAAAGGTCCTGTCCCATCGAATAACCTCAGTTTCCGTTCAAAACCACTCCAGGGTTTTAGTCCTACTAAAGTCGTGTTATCTAAACCTGGTGCACTGTTCGTATGCCCTTTGCCAGGCAATCCGTCAGCGACGACATCTGATCACGACGTCCACAGCGCTCCTACAGCTGCGCAACCTAAACATGCATCTGATGCAAGTCAGGGTGAATCAATTGGTGATGTTGACAGTGCTGTGTTTACGCATTCTGGTTTTGCAAGCCACACTTCTGCAATGGATAGCACAAACACTGCTCACCCGAGCATTAAGCCTAACTCAACGATAGATGATAAATTGTTGGAAAACCTCAAATCGCTCGACTCTCCACAAATAATACCGTCTAAGCCAGCGGAGAAGTCGACTCAAGGTGACGTCGTCGTCGGAACTAATTTCCCGGAATCAGATCAACAAGGATCGAGTAATTCTGAATTAAATACCTCGAATGTATCCACTTCAAACTTGGCTCGCTCGTCGAGTCAAGAAGACGTGCACAAACTACAGCAGAAAGTTCTGCTTCAACAACAGCAACTGATCGAACAACAACAACGCTTCCTGGAGCAGCAAACACTGGGCGAGCATTCTCACGTCTGGAGGCTAATGGAGCAAATAAAACAACAGCAGAAAGAGTTGGAAGAACTGAGAAGCGAGATGAAGGTCAAGGATCAATTCggtgaaattgaaaaacatttggaaaatttggaaCGGCGTCAGAATCAAACAGACGTGAAAAAGCCTACCGGGTTGaagtcggatggagccgtcgGGGAACGGAACGAAACAGAGTCCAAAAAAGTTTCCgaagaaatgtttgaaaaaaataaggaaagTGAGAATTTGGAAGTGGAAAAACAACCGCTCGACCATGCGACACAATATCAGTTGAGTGAAATTACTAGTGAAGTTAAGAAGGAACCGTCAGTTAGCAGCGAAACAGAAGGAGTGAAGGATGATTTTCTGATCACTCAGTTGCGTGAGTTTTCATTAACACCTTCACAGCACAATGACAAAGACGTCATGCCAGGTTCGACTCGAGAGCCTACCATCACTCCAGTGACCGAACAAGGCGATGAGGTCAGAACTGCTACTTTATCAGAGTACCCTCCACCGAAACCATCAAGGATGTCTCCAGATAAACACGACCTTCCAACGTTGAAAAAATCAGAAGATTTGCCTGCAGTCAGCACTTCTTCGTCGTCTGAAATCGACACACCAGTCCTAACTCAACAGTCAGAAATCGCATCGAACGTGGAGGCGGTTGAACCCCCGAAAGAAACTGAAGCTCCCCCACCAAAACCAATGAAGCACCGTCCGCCACCTCCTACCCCCGAGGTACACGCCCAGACACGACCGGAGCTGAGCCAGGTTACCCGAGCTACTCTTGCCAAACCCACAGCAGATTTAGATGCCCTCAGTGGCGACACAGCGAGCGTGAAAAGCGATGAAGTGGAGTACGCGATACAACTCGCAGGCCTGGTTGAACATTACAGGGAGGTCGTAAATAATTTAACGAAGAAACAACCTCGTGGTCCAAGCATTCTTACTAAGGAATGGCTGGCTGTTCAACATTACCAGGATACAGTGAGTCAACTTCTGACTTCTGATGTTGGGAAACATAACACGACTAAAAACAGATACTTGGATATATTGCCATATGACCACACAAGAGTAATTTTAAACAACAAGGAAGACTCGGATTATATAAATGCTACGATGATAGAGGATTTGACGCCACTCTCACCAAAGTACATCGCTAGTCAGGGGCCGATCCCGCAATGTTTTCTCGACTTTTGGTTGATGGTGTGGCAACAGAAATGTCCGCTGATTGTCATGTTGACAAAGGAAGTCGAGGGAAAGAAGCTCAAGTGCCATCAATACTGGCCTAAAGATGAGGGACATTCGATGCTTTTTGGGTCTCTTAGAGTCACTATGAAACGCCAAACATCCCTGGCATTTTGGAAAGAAAGAATCATTCACATCACCCACAATGAGACTCACGAGCTTCATGTTGTTGAACACTATCAGTTCACTGGCTGGCCTGATCAGTAA

Transcript

ENSAPQT00000041391

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9H3S7	Tyrosine-protein phosphatase non-receptor type 23 OS=Homo sapiens OX=9606 GN=PTPN23 PE=1 SV=1
Q6PB44	Tyrosine-protein phosphatase non-receptor type 23 OS=Mus musculus OX=10090 GN=Ptpn23 PE=1 SV=2
O88902	Tyrosine-protein phosphatase non-receptor type 23 (Fragment) OS=Rattus norvegicus OX=10116 GN=Ptpn23 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003722 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03097 all species →	BRO1	BRO1-like domain	Repeat	Interproscan
PF13949 all species →	ALIX_LYPXL_bnd	ALIX V-shaped domain binding to HIV	Domain	Interproscan
PF00102 all species →	Y_phosphatase	Protein-tyrosine phosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000242 all species →	Domain	Tyrosine-specific protein phosphatase, PTPase domain	Interproscan
IPR004328 all species →	Domain	BRO1 domain	Interproscan
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR038499 all species →	Homologous_superfamily	BRO1 domain superfamily	Interproscan
IPR025304 all species →	Domain	ALIX V-shaped domain	Interproscan
IPR045251 all species →	Family	Vacuolar protein-sorting protein Bro1-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23030 all species →	PCD6 INTERACTING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0006470 all species →	Biological Process	protein dephosphorylation	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005768 all species →	Cellular Component	endosome	Interproscan
GO:0032456 all species →	Biological Process	endocytic recycling	Interproscan
GO:0043328 all species →	Biological Process	protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	Interproscan
GO:0045022 all species →	Biological Process	early endosome to late endosome transport	Interproscan
GO:0071985 all species →	Biological Process	multivesicular body sorting pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000036940.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.