Detailed information of ENSAPQP00000037839.1 in Leptogorgia sarmentosa

Genomic Location: chr7:624780...627679
NR annotation: CAB3989749.1, visual system homeobox 1 isoform X1 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q90277Visual system homeobox 1 OS=Carassius auratus OX=7957 GN=vsx1 PE=1 SV=1
P41935Homeobox protein ceh-10 OS=Caenorhabditis elegans OX=6239 GN=ceh-10 PE=1 SV=1
O42250Visual system homeobox 1 OS=Danio rerio OX=7955 GN=vsx1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000263 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00046
all species →		HomeodomainHomeodomainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR017970
all species →		Conserved_siteHomeobox, conserved siteInterproscan
IPR001356
all species →		DomainHomeobox domainInterproscan
IPR009057
all species →		Homologous_superfamilyHomeobox-like domain superfamilyInterproscan
IPR023339
all species →		DomainCVC domainInterproscan
IPR052294
all species →		FamilyVisual system homeobox transcriptional regulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46892
all species →		VISUAL SYSTEM HOMEOBOX 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:1990837
all species →		Molecular Functionsequence-specific double-stranded DNA bindingInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSAPQP00000037839.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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