Gene detail

Detailed information of ENSAPQP00000038091.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028402983.1, homeobox protein SIX1-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

Transcript

ENSAPQT00000042746

ACCCAGTTGTCCTATCTAGTTGATTGACATATTGTCATGGCTTTTAATAAGCGCGAACTTGAAGTGCGCGTCCCAGCTCAAATCAAGTGCTGTGCGTCCGCGCAATAGGTGGGCATACCTTGATAAAGCAAATGAAATTAACATCATACGCGTAAGCCTACAACTCCGTCTCGCGCAGTCAAGGTGCGCGCTCAATGTAAACTTTGAaaagactacaaaaaaatttcgaatttttttaaagttttcaaatttgagtGAAAGTAACCAGCTTGGACTCGATTTTAAATCTAGCAAAAAATATGCTGCCAACTGTCAATTTTACTCCAGAGCAGGTAGCTTGCGTTTGCGAGGTTTTACAACAAAGCAATGACATGGACAGACTTGCGAGATTTCTGTGGTCCTTACCGGAACATAACAGCGTTCAAAAAGAGGTGAGCGTGCTCAAAGCGAAGGCTGCAGTGTACTTTCACCAGGGAAAGTTTCAAGAGCTCTATCGTATCTTGGAGAACAATAATTTCCCGATATCTTCGCACAACAAACTGCAGTCGTTGTGGATGAAAGCGCACTATATCGAGGCAGAAGAGTTGAGAGGAAGGCCTCTAGGCGCAGTCGGAAAGTACAGAGTAAGACGAAAATTTCCTCTGCCACGAACAATATGGGACGGCGAGGAGACTAGCTATTGCTTCAAGGAACGCTCTAGGAATATACTGCGTGAATGGTATACACATAACCCTTATCCTTCACCTCGAGAGAAACGCGAGCTCGCTGGAGCAACTGGATTGACAACAACACAAGTTAGCAATTGGTTTAAAAATAGAAGACAACGCGACCGGGCTGCTGAAGCCAAAAATAGGGACCCGAACAACAACACACTCGACGATGCTTCCTCGCCAAAATTAAACTTAGTCACAGCGACACGGCATGGTGGCTTAGACGGAGTGCCGAAACAAAATGGCCTGACTCATGTTGACTTTCCGTGCCTACCTCAATCTCATGGACCGCAGACATCCATCAAACTCGAAAGTCATGAAATGCAGCAAATGCTTGCAGCAAACCACGAAGCAATGCTAGCTCAAAACGTCGCCGAGTTTGCTCATTGCTTACCAGAAACACATATGCTCAACACTCTTACACCTTCGCTTGTAGGACTTTGAATTAACGTCGCGTTTTAAAGGTATACTGACTTTAGACGAAATTACGCTTCAATATATCTGTTAGTTTTAAGAAAAACTTAACGAATTGACACAGTAAAACCCGCCATAAAAACCAtagaaaacatgaaatttggACTGAAGCTGCCAAAACAAACAGCACGGTTTGATAAATTTCGTGTTATAAAAACCTAAAAGATTCTCAGATACTCCGTTGGTCAATTGTTGGAGTGAGTATCACACTAACACACATAcacttttatttcaaattgcaaGGCATTCAAGTTGTATTTATCCACTGTATAAACACAAACGTACATTGACAAGAATATAAAGCTCggtttaaaataataaaccaGTAGCTGTGATTTGTTTTGAAGTAGAGAGATTTGAATCATGCCACAACCACAACCAGTTCTGCATGATCTTTTCATATATAGGCCTCGCGTATAGGATGGTTTTTGCTGTCATTTCTCTGAGCGTTATCATACGCGGTCTGTATACAAAAACTAAATAACTATATAACAACTTTTTCATAGCGGGGGTTAaactttgggttgaaatcacAAGTTCATTATTAATGCATTTAGTGTCAAGAAAAATTAACAATTTATGCATTTTTGCGCAACTATGTAATGTAtacatacaaaaataattgtcAATAGAAATATAGTTTATATCAAGTATACTGTTATGTTGTGTTGTAGATGGTAATCAACTTGCAGATCGAAACTAATGTTCAGTATAGCTATTAATATATCGTGTGTCGTAttttggagaaaaaaaactgaatGCATTTGTATGATAGCCTCATTTCGTTGCTCCATATATACTGGAAATTTCTGCAGTTGATTCTACCATCTACATCTTGTGTTCCTCCTATACATAACGTCAATACATGTAAATATAACCAGACAAATATCATGAAATGAACGAAACaatgtaattatatatatatattcacagAGAAATTAACAACCTCATGTGGGGCTTAAAGTCCTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6NZ04	Homeobox protein six1b OS=Danio rerio OX=7955 GN=six1b PE=1 SV=1
Q9I8H0	Homeobox protein six1 OS=Xenopus laevis OX=8355 GN=six1 PE=2 SV=1
Q6DHF9	Homeobox protein six1a OS=Danio rerio OX=7955 GN=six1a PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000714 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16878 all species →	SIX1_SD	Transcriptional regulator, SIX1, N-terminal SD domain	Domain	Interproscan
PF05920 all species →	Homeobox_KN	Homeobox KN domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017970 all species →	Conserved_site	Homeobox, conserved site	Interproscan
IPR001356 all species →	Domain	Homeobox domain	Interproscan
IPR031701 all species →	Domain	Homeobox protein SIX1, N-terminal SD domain	Interproscan
IPR009057 all species →	Homologous_superfamily	Homeobox-like domain superfamily	Interproscan
IPR008422 all species →	Domain	Homeobox KN domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10390 all species →	HOMEOBOX PROTEIN SIX	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000038091.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.