Gene detail

Detailed information of ENSAPQP00000038509.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3977866.1, Retrovirus-related Pol poly from transposon 412 [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000043256

ATGTCGTCCGCTACAAGCAGTCAGGCATCAAATGAAGGTATGTTAGTTGTTCCTTCTTTTGTTGGGATCTCGGGGTCGATATCGTCGACGCAATCGAGTGGAGTTAACCGGACTGAGAACACCCTTGGTACCCATGTTTCAAGCACCCTTTCTAGCTCACCACTGGTTTCCACAGGAACTATTACCGGTCTCAACCAGGCCTTTATTTTGGGTCCTGGCCGTCCGCCTATTTCGGCAAAAAGTGTCTCGCAAATTGTAGCATATAAATTTATCGAGATGTCGGACCTTATCCCAGAAAATCTAGAGAGCCCATCCGTCGATCTACCTTCATTTACTATCGAAGGTCACTCGATTGTCCCTACGACTACTACTGCGTCGCGCAAGAAAAATGAAGTATATGATATCCTGACGTGGGTCGAGTGCTTCAATAGCTATATAGCAGTCATCACGGCGTTTTATCCTGCGAGAGCGCGAGATTTACTGGCGTATATGGCGCTAATAATACGCATGGCTAAGCAATTTCCAGGACGGTGCTGGTACAACTATGATCGCGCCTTTCGCCTCGAAGCGGCTGCATCCAATTCGACGAATTGGAGTCAAATCAATGCCGATCTGTATCACTACCATACGTCGGTAGCGGTCCAGCCCACACAATCACAAGCGTCACGACATCGCGAACCTCGTGGTGACCCAAATTCAATGATTATTTGCAAATCATGGAATTCAGGGTCCTGCAGCAGTCCACGCGAATACTGTAGATTTCGCCATCGATCCGGCGGCGCCAAGCGAGACGCGATTAAGAGAGACGGTGTTTTAAATAACAATATTTTGTCTTGTCTATCATTTAACACTACTTTGAACATGCCTGACGTTTCTTCGGTTACCCCAATTAATGTAGACAATTTAGCTTTACAATTATGTAGTCATCCGGACCGCCGTAGAGTGGATTATGTTTTAAATGGTTTACGTAACGGGTTCCGTCTCGGTTTTCACTCGGAATCTACAACTCTTAAGTCTGCCAAGGCTAATTGTCCATCTGCCCTCGCTCACCCGTCAGTAATCACGAAATACCTTGCCAAAGAAGTGTCGCTGGGTAGGGTTTTTGGTCCTACCCCAGAACCAGCATTAGATAACCTACAAATCAGTCGTTTTGGCGTCATTCCTAAAAAGGACGGTGGTTGGCGTTTAATTCTCGATTTGTCCTTTCCGTTTGGGCATAGCGTAAATGATGGTATTAATAAGGAGGAATTTACCCTCACATATAGTAAAGTCTCTGATGCTATTTCACTAATCATAAGAGCCGGACGCGGTGCCTTACTGGGTAAAGTGGATATTCAAAGTGCTTATCGCATTATTCCAGTGCATCCTTCCAACCGTCATTTATTGGGAATGTTTTGGCAAGGTGGTTACTATATTGATCTAACTTTACCCTTTGGCTTGCGTTCCGCGCCCGGAATTTTTAATAGCGTGGCCGATTTATTCCACTGGTGTTTAGTTCATAATTGGGACGTACTGGATCTACTGCACTACCTGGATGACTATTTCACCTTAGGACCTCCTAACTCTGATGTCTGTGCGTTGCGTCTCAAAGCGATTGACCAGGCGGCGACTGATATTGGTATACCCTTGTCCCCGGACAAATGCGTGGGCCCCACCACTAGCTTGGTTTTTCTAGGGATTGAGTTAGATTCAGTTAAGATGACTGCTCGACTACCAACCGATAAACGGACTGAGCTCTTTGTCCTCCTCCATGAATGGGCCAACAAACGTTGGTGCAGATTAAAGGAACTGCAATCGCTAGTTGGCAAATTAGGCCATGCATGTGCAGTCGTCCCGCAGGGGCGTACCTTCTTGCGCCGTCTCCTCGACCTACTGAAAGGTCATTCCAGCAAGCATTCTCGGTTTATACGCTTGAATAAGGAGTGTAAACTGGATATCGAGTGGTGGCGGTCTTTCTTGCCTGCGTGGGACGGAGTTTACTTTTTCGATTTACCAGAATGGGCCCCAGTCCCTGATCTTTTCATCTCCACCGATGCTTCAGGCAGCGATGGGTATGGCGCATTTTATTCCGGGGAATGGTTCAACGGCGCGTGGTCTGCCGCCCAGCGGCCTTTGAGTATTGCTTATAAGGAGCTATTCCCCATAGTACTTGCATGTAATGTCTGGGGGAATACCTGGCGCAATCGCCGTATCCAGTTTTATTGTGACAACCAAAGTGTCGTAGCCATCCTGTCATCGGGCACTTCGAAAGACAGCCGCCTCATGCAGTTATTAAGAGAGTTATTTCTGTGTGCAGCCCgctttaattttaaagtcaCAGCACAACACGTACCGGGCAAAGAGAATGGGATAGCTGATTCCCTGTCTCGTTTTAACCTGCAGGCGTTTCGTCAGCTGGCTCCACAGGCCCGTCCACACCCGGTGCAGATCCCGGTGCCTTTGCTCGCCCGTCTGAACTCCGAGAACTCCAACAGCAGGCAAGAACTTTAA

Transcript

ENSAPQT00000043256

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P10401	Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1
P04323	Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster OX=7227 GN=pol PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000096 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF13456 all species →	RVT_3	Reverse transcriptase-like	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036397 all species →	Homologous_superfamily	Ribonuclease H superfamily	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR002156 all species →	Domain	Ribonuclease H domain	Interproscan
IPR052055 all species →	Family	Hepadnavirus polymerase/reverse transcriptase	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR000571 all species →	Domain	Zinc finger, CCCH-type	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33050 all species →	REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0004523 all species →	Molecular Function	RNA-DNA hybrid ribonuclease activity	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000038509.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.