Gene detail

Detailed information of ENSAPQP00000038774.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028408678.1, cullin-2-like [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000043590

ATGTGTGTTGCACATCCCGAACCTCTTGTGGAAAGACTATATTTTGAAGTCAGGACTTTACTCACATCTCATGTGGAAAAAATTTATATGGAAATATCTTCAGCGTCGTACTATCTTGAATTGTATTACAATCATTGGTCACAGTACAACAATGGATGTCGCTTCTTGAATATATTATTTCGTCATTTAAATCAACATATTAAGGCCGAAAAGCACGATGGTGGAGATGCTTCACCGTTTTCTATGCCCACGCCAGAAATCGAAAAAACGCTTGAAGTTGGCGAGCTAGcattgaaaatttggaaagaGGTTATAATCGAGCCtttaaaagaacaattggTTGCTGAGCTCTtggttgaaataaaaaaGGATAGAGAAGGCGAAAACACCCAACACAACATGATTATTGGAGCCATTGAATCGTTTGTTATTGTCCAAGAGTACTATCCTCGTGGAAAGTTACAGCTTTACGAAACTGAATTTGAACGAAAAGTTTTGGATGAGACAAGAGAGTTTTACCGGAGAGTTTCCTCGCGGCTTGTGTCCGAACTCACTTGCTCAGCATATTTAGTGAAGGCGGATAATTTAATTCAAGACGAAAAAATTAGAGCATCCCGTCTTTTTCATAATTCTTCAACGAACAAAGTGAACAAAGAGTGCGAGGGACAGCTGGTTGAAAGTCACGTGACTTTGCTGCAGACGGAATGCAGACAAATGATAAAAGATGAGAATCTTGAAgATCTTGGAAGAATGTACTTGTTAATGAAATCAAGTGTAATGGGCTTGCGATCGATGGTTCAACTGCTGGAAGATAACATCAAAGAAAAAGGATTGGAAACAGTTCGATGTATAGATGCAGAAAAGgctCCTCATAATTATGTGGATGCTTTGCTTCAAATACACAGGAAGTATTTCGATCTAATCAATAACACATTCAATGGGGATGCAGCATTTTTGAGAGCTTTAGACCAGGCATGTTATGTAATCGTAAATTCTAGTCAATCAGAAAAGAAGAACTGTCAGTCAGCTGAACTGTTGGCACGCTTTGCAGATTCGATCTTAAAGAAGAGTCAGAGGAATCTGAGTGAAAGCGAACAAGAAGAGAAAATGAATGATATTaTCATCATATTTAAGTACCTGGATAATAAAGATATCTTTCAAAAGTTTTATGCGAAAATGTTGGCTAAACGTCTCATTCATAATCTATCAATGTCAATGGATGCTGAAGAAAATTTGATCAACCGATTGAAGCATACGTGTGGTTACGAATATACCAACAATCTTCATCGAATGTTTACGGATATAAACTTAAGTAAAGGCTTAAATAAAGATTTTACCGATGGATTGGCGGACACCGACCGCAAACTTAAAATCAGCGCATCATTTCTTATACTTCAGTCTGGTGCCTGGCCACTAGCTCAGAATGCTATTTCTCCACTAACAATACCTCAAGAATTCGCTGACGCAATTACACTGTTTGAAGAGTTCTATAATAAACGTTTTATTGGACGAAAATTAACATGGCTTCATCACCTCTCCAATGGAGAAGTTCGTTTGAATTTTCTGAAGAAAACGTACATCGTTACTGCATCAAGTTACCAAATGGCTGTTCTACTTCTTTATAATCATTCAGAATCCCTCAGTTACAgTGAGATTGCTACACAAACTGATATAAGTCCCAAAGAATTGGAAAGAACGTTAAAGTCACTGCTTGCTGTGAAACTTTTGATTTCTTCCGAGCCTAGTGAATTTACACAATCGACGCTATCAGTCAACAAGGAATTTTCTAACAAgagaacaaaattaaaaataacagTTCCTGTTATGCGTGAAACGGTTCAGGAAGTCAATCAATTTCGTTCTTCCATTGACGAAGACAGAAAGTTGTATATTCAGGCAACAGTTGTCCGCGTGATGAAAGCGCGCAAAATTCTCAAACATAATATACTTATACAAGAGgTTATTAGTCAATCAAAGACGAGGTTCTCTCCAAGCGTGCCAATGATTAAGAAAGCCATCGAGTCTCtaatagaaaaacaatatttggaaCGAAGTGGAGGAAGCAAGGATGAGTACACCTACTTGGCTTAA

Transcript

ENSAPQT00000043590

AGATGTGTATTCAATGTGTGTTGCACATCCCGAACCTCTTGTGGAAAGACTATATTTTGAAGTCAGGACTTTACTCACATCTCATGTGGAAAAAATTTATATGGAAATATCTTCAGCGTCGTACTATCTTGAATTGTATTACAATCATTGGTCACAGTACAACAATGGATGTCGCTTCTTGAATATATTATTTCGTCATTTAAATCAACATATTAAGGCCGAAAAGCACGATGGTGGAGATGCTTCACCGTTTTCTATGCCCACGCCAGAAATCGAAAAAACGCTTGAAGTTGGCGAGCTAGcattgaaaatttggaaagaGGTTATAATCGAGCCtttaaaagaacaattggTTGCTGAGCTCTtggttgaaataaaaaaGGATAGAGAAGGCGAAAACACCCAACACAACATGATTATTGGAGCCATTGAATCGTTTGTTATTGTCCAAGAGTACTATCCTCGTGGAAAGTTACAGCTTTACGAAACTGAATTTGAACGAAAAGTTTTGGATGAGACAAGAGAGTTTTACCGGAGAGTTTCCTCGCGGCTTGTGTCCGAACTCACTTGCTCAGCATATTTAGTGAAGGCGGATAATTTAATTCAAGACGAAAAAATTAGAGCATCCCGTCTTTTTCATAATTCTTCAACGAACAAAGTGAACAAAGAGTGCGAGGGACAGCTGGTTGAAAGTCACGTGACTTTGCTGCAGACGGAATGCAGACAAATGATAAAAGATGAGAATCTTGAAgATCTTGGAAGAATGTACTTGTTAATGAAATCAAGTGTAATGGGCTTGCGATCGATGGTTCAACTGCTGGAAGATAACATCAAAGAAAAAGGATTGGAAACAGTTCGATGTATAGATGCAGAAAAGgctCCTCATAATTATGTGGATGCTTTGCTTCAAATACACAGGAAGTATTTCGATCTAATCAATAACACATTCAATGGGGATGCAGCATTTTTGAGAGCTTTAGACCAGGCATGTTATGTAATCGTAAATTCTAGTCAATCAGAAAAGAAGAACTGTCAGTCAGCTGAACTGTTGGCACGCTTTGCAGATTCGATCTTAAAGAAGAGTCAGAGGAATCTGAGTGAAAGCGAACAAGAAGAGAAAATGAATGATATTaTCATCATATTTAAGTACCTGGATAATAAAGATATCTTTCAAAAGTTTTATGCGAAAATGTTGGCTAAACGTCTCATTCATAATCTATCAATGTCAATGGATGCTGAAGAAAATTTGATCAACCGATTGAAGCATACGTGTGGTTACGAATATACCAACAATCTTCATCGAATGTTTACGGATATAAACTTAAGTAAAGGCTTAAATAAAGATTTTACCGATGGATTGGCGGACACCGACCGCAAACTTAAAATCAGCGCATCATTTCTTATACTTCAGTCTGGTGCCTGGCCACTAGCTCAGAATGCTATTTCTCCACTAACAATACCTCAAGAATTCGCTGACGCAATTACACTGTTTGAAGAGTTCTATAATAAACGTTTTATTGGACGAAAATTAACATGGCTTCATCACCTCTCCAATGGAGAAGTTCGTTTGAATTTTCTGAAGAAAACGTACATCGTTACTGCATCAAGTTACCAAATGGCTGTTCTACTTCTTTATAATCATTCAGAATCCCTCAGTTACAgTGAGATTGCTACACAAACTGATATAAGTCCCAAAGAATTGGAAAGAACGTTAAAGTCACTGCTTGCTGTGAAACTTTTGATTTCTTCCGAGCCTAGTGAATTTACACAATCGACGCTATCAGTCAACAAGGAATTTTCTAACAAgagaacaaaattaaaaataacagTTCCTGTTATGCGTGAAACGGTTCAGGAAGTCAATCAATTTCGTTCTTCCATTGACGAAGACAGAAAGTTGTATATTCAGGCAACAGTTGTCCGCGTGATGAAAGCGCGCAAAATTCTCAAACATAATATACTTATACAAGAGgTTATTAGTCAATCAAAGACGAGGTTCTCTCCAAGCGTGCCAATGATTAAGAAAGCCATCGAGTCTCtaatagaaaaacaatatttggaaCGAAGTGGAGGAAGCAAGGATGAGTACACCTACTTGGCTTAAGTTATTCAAGAGTTG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9D4H8	Cullin-2 OS=Mus musculus OX=10090 GN=Cul2 PE=1 SV=2
Q13617	Cullin-2 OS=Homo sapiens OX=9606 GN=CUL2 PE=1 SV=2
Q5RCF3	Cullin-2 OS=Pongo abelii OX=9601 GN=CUL2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000554 (this species only)
Ubiquitin family	E3\|E3 adaptor Cullin RING\|Cullin · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10557 all species →	Cullin_Nedd8	Cullin protein neddylation domain	Domain	Interproscan
PF00888 all species →	Cullin	Cullin family	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR016159 all species →	Homologous_superfamily	Cullin repeat-like-containing domain superfamily	Interproscan
IPR019559 all species →	Domain	Cullin protein, neddylation domain	Interproscan
IPR016158 all species →	Domain	Cullin homology domain	Interproscan
IPR001373 all species →	Domain	Cullin, N-terminal	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036317 all species →	Homologous_superfamily	Cullin homology domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR045093 all species →	Family	Cullin	Interproscan
IPR016157 all species →	Conserved_site	Cullin, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11932 all species →	CULLIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0019005 all species →	Cellular Component	SCF ubiquitin ligase complex	Interproscan
GO:0030674 all species →	Molecular Function	protein-macromolecule adaptor activity	Interproscan
GO:0031146 all species →	Biological Process	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	Interproscan
GO:0031461 all species →	Cellular Component	cullin-RING ubiquitin ligase complex	Interproscan
GO:0031462 all species →	Cellular Component	Cul2-RING ubiquitin ligase complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000038774.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.