Genomic Location: chr9:6795426...6799171
NR annotation: CAB3987780.1, Hypothetical predicted protein [Paramuricea clavata]
Species Leptogorgia sarmentosa · all data for this species · gene families
| CDS |
| ENSAPQT00000043889 |
| Transcript |
| ENSAPQT00000043889 |
| Protein |
| ENSAPQP00000039020.1 |
| UniProt accession | Description |
|---|---|
| A0A8V1ABE9 | D-serine dehydratase OS=Gallus gallus OX=9031 GN=DSD PE=1 SV=1 |
| Q54XE5 | D-serine dehydratase OS=Dictyostelium discoideum OX=44689 GN=dsd PE=1 SV=1 |
| B2DFG5 | D-threo-3-hydroxyaspartate dehydratase OS=Delftia sp. (strain HT23) OX=518882 GN=dthadh PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007275 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF14031 all species → | D-ser_dehydrat | Putative serine dehydratase domain | Domain | Interproscan |
| PF01168 all species → | Ala_racemase_N | Alanine racemase, N-terminal domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051466 all species → | Family | D-amino acid metabolism enzyme | Interproscan |
| IPR026956 all species → | Domain | D-serine dehydratase-like domain | Interproscan |
| IPR029066 all species → | Homologous_superfamily | PLP-binding barrel | Interproscan |
| IPR042208 all species → | Homologous_superfamily | D-serine dehydratase-like domain superfamily | Interproscan |
| IPR001608 all species → | Domain | Alanine racemase, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR28004 all species → | ZGC:162816-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0008721 all species → | Molecular Function | D-serine ammonia-lyase activity | Interproscan |
| GO:0036088 all species → | Biological Process | D-serine catabolic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K20498 | DSD1; D-serine ammonia-lyase | EC:4.3.1.18 | D-Amino acid metabolism | ko00470 | deepkoala |
Genes whose expression across the transcriptome samples of Leptogorgia sarmentosa tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Leptogorgia sarmentosa, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
