Gene detail

Detailed information of ENSAPQP00000039400.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: XP_028396415.1, vacuolar protein sorting-associated protein 53 homolog isoform X1 [Dendronephthya gigantea]
Species Leptogorgia sarmentosa · all data for this species · gene families

Sequence

CDS

ENSAPQT00000044343

GCggtattcaagatggcggaaccGGAGGAGTTGAATGGACAAGAAAGTCATTTTTCAAAGCCTATCGTCTACTCGCCCGAAGTGGAACAGGCAATTTCTGAAGTATTTCACAGTGATGATCCGTTAGACAGTAAAGACTTCAATGCAGTCGATTATATCAACTCAATATTCCCTACCGAACAGTCCCTGACAAACCTGGATGAAGTTGCCAACAAAATGAAGTTCCGAATACGAAGTTTGGATGGTGAAATTCGACAAGTTATTCGTGGACAGACAAACGTTGGCTTAGAAGGCAGACAGGCGCTAGAGGAAGCACAACAAGCCATCCAACAGCTGTTTGAGAAGATCAATGACATTAAATATAAAGCTGAAAAGTCTGAACAAATGGTAAAAGAAATCACAAGAGATATCAAGCAACTAGACTACGCGAAACGGCATTTAACCAATTCTATCACAACTCTTAATCATCTGCATATGTTGGTTGGTGGAGTGGAGAACTTACAAATACTGGCAAGAAAGAGACAGTATAAAGAAGTTGCGAATCTCCTGCAAGGAGTGCTCAACGTCCTTGAACATTTCAAAAAGTATTTTGGCATTCCACAGATCGCACAGCTCGCTGATAGGGTAaaaacgattcaaaatgaactGGGCACTCAAATTCTAACGGATTTTGAAGAGGCTTTATCAGTTCGTGGTGTGAAGCCTCCTGCCGGACCCAACTCTCTTTTATCAGAAGCCTGTCAGGTTGCGTGCGTCCTAGACAATAAAGTCAAGGAAGATTTAATCAAATGGTTTGTCAATCTACAACTTGAAGAATATGTTCAATTATTCAGCGATACACAAGAGGTTGGTTGGCTGGATAAAATCGACAGGCGGTATTCGTGGTTGAAGAGAGTTTTAGTTAAATTTGAAGAAGATTTCCAAGGGACATTTCCCGTTGAGTGGCACGTCGAGGAGAAGATTTGTGAAGAATTTTGTCATATTACCAAAAATGACTTGGGCAAGACGATGTCCTCGAGAACAAGCGACATTGACGTTAAGCTTCTGTTGTTTGCGATTCAaagaaccaccacgtttgaaaGTTTTCTTGCAAAACGCTTTGCTGGAAGCCTCTATGAAGCGAACCAGGTATTCGGAGAAATTGtgttaaaaaattCAAAGGAATCACGTTTTCTGGGTTTGATATCGAGATGCTTTGAGCCTCATTtgcatgtttacatcgagtctCAAGACAAAAATCTAAGCGAACTACTCGAGCGTTTTGTCACGGATTTCAAATCTCTGGGAATCCCTCAGGTCGAAGGAGATGGTAGCAACGTGATCTTGCCGAGTGCTGGGGAGCTGTTCGTGTTTTACAAGAAGTGTCTGGTCCAGTGTTCGCAGCTCAGCACTGGTCCACCTCTCTTGTCACTCACAGCGACGTTTCAAAAGTATCTCAAAGAATATGCGACCAGAGTGCTGTCCGCAAACATGACGGTAACTCAGTCCGGGGGATTGGCGAGTATTCTCAAAGATAACGAGGTCAAATTCAACAGAGAAGATCAAACGCTAGCCTGCTGTATCCTCTGCACAGCGGACTACTGCTTAGAGACAACACAACAGCTTGAAGAAAAGTTAAAAGAAAAAATCGATGTGGAATTGTCAGAGAAAATTGATCTTGTGAACGAGCAAGATGTCTTCCATTCAGTGATATCGAATTCTATTCAACTCTTGGTCCAAGACACTGAGAATGCTTGCGACGCTCCACTCACAGCTATGGTCAAAGTCCATTGGCAAAGTATCGAGGCCGTCGGAGATCAAAGCACATACGTGACCGCCATAGCAGCACACCTTCAAAATATCATTCCCGTCATTCGCGAATACCTCGCATCAGTcaggaaatattttacacaatTCTGTGTGAAGTTTGCCAATTCGTTTATTCCCAAGTTCATCAGTCAAATTTACAAATGCAAACCAATAAGTACCGTGGGCGCAGAGCAGCTATTACTGGATACACATTCTCTCAAGACCATTCTTCTTGACTTACCTTCGCTTCTTTCAAACGTGCAAAGAAAAGTTCCTGCAAGTTACACTAAAGTTGTTACAAAAGGAATGGAGAAAGCTGAGATGATTTTGAAGGTTGTCATGTCTCCCCACGATCCACCCGTGGGCTTCGTCGACAACTACATCAAATTAGTTGGAGATGCGGACACGTCCAGTTTCCAGAAACTTCTGGACATGAAGGGTTTACGTCGAAGTGAACAGCACGCCATGTTGGATTTGTTTCGTTCCCGTCTCCCCACACCGACCACAACTGACGCCAGCAAGACGTCGTCAGGGGCAACGCCGGAGCTCGAGTCGAGCAGGATAAAGAGACTGGAACGACTCATTAAGAAACAATTCTAA

Transcript

ENSAPQT00000044343

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5ZLD7	Vacuolar protein sorting-associated protein 53 homolog OS=Gallus gallus OX=9031 GN=VPS53 PE=2 SV=1
Q5VIR6	Vacuolar protein sorting-associated protein 53 homolog OS=Homo sapiens OX=9606 GN=VPS53 PE=1 SV=2
Q5R5J4	Vacuolar protein sorting-associated protein 53 homolog OS=Pongo abelii OX=9601 GN=VPS53 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04100 all species →	Vps53_N	Vps53, N-terminal	Repeat	Interproscan
PF16854 all species →	VPS53_C	Vacuolar protein sorting-associated protein 53 C-terminus	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039766 all species →	Family	Vacuolar protein sorting-associated protein 53	Interproscan
IPR007234 all species →	Domain	Vps53, N-terminal	Interproscan
IPR038260 all species →	Homologous_superfamily	Vps53, C-terminal domain superfamily	Interproscan
IPR031745 all species →	Domain	Vps53, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12820 all species →	VACUOLAR SORTING PROTEIN 53	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000938 all species →	Cellular Component	GARP complex	Interproscan
GO:0042147 all species →	Biological Process	retrograde transport, endosome to Golgi	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20299	VPS53; vacuolar protein sorting-associated protein 53	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.