Gene detail

Detailed information of ENSAPQP00000039712.1 in Leptogorgia sarmentosa

Genomic Location: not available for this species
NR annotation: CAB3985562.1, Leucine-rich PPR motif-containing, mitochondrial [Paramuricea clavata]
Species abbreviation LSARM · all data for this species · gene families

Sequence

CDS

ENSAPQT00000044717

ATGGCTGCCATTGTGAGACAGTGTTCAAGAGTTACTCTGCGAGGTTTAACATCATTTTCCTTGCGTTCTCGTCCAGTACAGCAAGCCATTTTGTCTCCTCTGTTACGAAAGAACCTTAAGGTTGAATGGAAGGTAGATTTAAGTCCGAAATACTTCTGCAGTTACACGCCAACTGTCATTGAAAATGGTTCTCCTGAAATTCCCGCTGCCTCGAGCGGCCCTAACCAAGGCGAAGTCGGAGCAATATCAAGCGAAAGTGATGAGTCTGAATTGATTAGTGGTTCGTCAAATGATCTTTATCGTATATCTCAACGTCTTGGCTCCGTCAGGCATGAAGAAACGTTGTTACAAGCTTTTGAAATTATCAAAAATGCTGAAGAACGAGATGTTCCACCACTGTTAATTTATCAATTGATCCGAAACTGTGGTAACCAATTGTTTACATGTATGCCAGAGAAACGAACTAAACTTGTTAAACGCTTTTGGTCTGAATTGAGAGAGAAAGGTGTTCATTTTGATGTGAGCCATTATAACATGTTACTGTCTGTTTATCTACAAAATCATCATTCATTCAGTCCACTGGAGATCttggaagaaatgaaaactgGTGCAGTTGAACCTAATCAAACCACCTTAGTGCTTTTTATTCAAGCTTTTTGTGAAAGTGGAGATATGGTTGGATCCCTTGAGATGTTAGGGATGATGAAGACGTTAGATATTCCAGTCACTGAACAAGTTTATGCTTCACTCATCACTGGTTACAGTCGAAGTGGagACATGGAGAGTGCACTTGGTATCATGGAAACAATGAGAGGGAATGGTTTAGAACCTGGTTTGGACACATACATGTCATTATTAACTGCCTATAGTGAAGCAGGGGAccttgaaaatattaaaaagGTTGTTGCTGAGTTCACTGCTAAGAAAGGCATGTGTCCAGTTGGAGTACCAATGGCCATTGTTGAAGctttagcaagagcaaaacaTTACTCTCTCATTCCAGGGATTTTGCAAGAAATGAGCATTAACCAATCTGTATTCAACAGTGAGTTGATCAACGTATTGAAGAATTTGATAGCGCGAGGACTGCATGAAAATGCTCTTGAATTGCTCAAAGTCATCCCCAGAAACCACATGGTGAACAGTGAACGGGTGTCTGTCCCTGAAGTGGAGTTCATAAGACAACTGGTTCTCTCTATTCAGGAGCCCAAAATGTTGGTTTCAATGTTGAAGAAAGTCGACGATgccaaaatattaaaatctcCATACGAACTGTCTTTAAACTTTAGTTATGGAAAACACGACAAAGCTGTAAGTTTGGCAATAATTGAAGCGATGGCAAGAAAAGGTTTGACAGTCAGACCACATTACTTCTATCCCATGATGGTGAATGCAATAAAGAATAACGATGGCAAAGATGCACTTGAAACACTTTCCTTTATAAGGCAGAGAAATCTACGACTGGATAATAATCTAATTCATTATGGAAAGAAAGCACTGAAGTGGGAGAACAAGACTGCACAAGACGTCATAAGATCATTGCAAaATATTGGAGAAGACTTGCTTTCGTACCAAAGTAAAGTGACAGCATTACATCTCTTTACTGATCGACTTGATcttgatgaaattaaaaatttaaTTGAGGAAAGTGGTGATGTTGTCGAAAACGAAGCACTTATTCCATGCCTTGAGTTACTCATTAAAAGAGATGACAGAACAGCTGACGCAGTTGAAGCGATTATATTTGCTGAAAAGAAAGGTCTTGATGTTGAAAACTGTGTATACACTTTGATAAACAGAATTTCCAGAACACGCAACGCTTCTCGTAAACTCATCGATTTCATGGAAACTCTGTTTGAAAAGAACATTAATGCTGGATCTAGGGTCTTCTCGCGAGTTTTATCTGCTCTCAGTAAAGACGACACAACTGATGAATTTTTTGAgTTTCTACGCATTTTAAAACGGAATAATGTGGAACCCGATGCCAGCAGTTATCGTGAAATATTAAAGAAATCCTCAAACATGGGCAGGAAAGACGCAGCCGAATTTGCATTCAACAAAGTTAACGACGTGTTTCCCGACGATCCAGTTGCCTATTCCTACCTGCTTTTGGCTTATGCTAAAAATAACGTGGGAAATCTTGGTTTCACCACCGATTTCAAAAATCGTGCTAAGATCTCCGCGATATTTGACCAAATGATGGAAAAAGGTCTAAAACCTTTTGATGCTGCTGTGTCACATGTGATCATTGCTCATTTAACTAaaggaaatattgaaatggcGGATAAAATCAAAGAGAAATACGGCACTGGAAGTAGAGCATTCATAGTCTACGCTCAGTATCTGAGGTTCTTTGCCAAGAAAGGAGATGTACACAATTCTGAACGTATAATCTCTGAGATGAAAGAAATGCAGAGTGATATGTCGCCGTATACATACAATTATCTTCTGCAGGCTTATAGAAAACACGGAGATGTTGAGAGGATTAAGGAACTTCTcgatgaaatgaaaacgaagaacattgaaaaaattttcatgaatTATAGTGAACTAATGATGGCTCAACTTAAATGGAGTGACATTGAAGGAGCATGGCAAGTTTATCAAAAAGAATGTCAAATTCTGGAGCGATTCCCAAGTGATTCGTGTTGTGTTCATCTCATGAGGGAACTGGGCTCTAGTCGAGATATCGTCAAGCTGGATGAACTTTCCAACGACATAACGAACTCTAAGTCGCTGCCAGAACatgaaaagaataaaatgaGACATGGCTTAGTGGTCGCGTATTTGGACGCTGGTGCCGAAGACAAAGTCAGAGAAATTGTCGAAAGAGAAGACTTTAAACACGAATACAGCCATTACAAAAATGTCGCCAGAAATGCTGCAGGATTGGGAAAGGTTGAATTAATACGGAAACTTATTTCGTTTCTGGAGGAACAAGGGTTGAAACCAAGGGGATTGTATGACCCTCTTTTATATGCTTATGGCAAGAACAACGACATGAGTGGAGCGTACGCGCTTAGAGATGAGATCATCGAGAAAGGCGAGACACAAAGCACCGTGTTTGTAAAGCTGTTTGAACGGCTGGCGGAGAACTGGAAGAAAGATGTGCAGGAGGAGTCGAGCGAACCAGAAAACGTCAACTGA

Transcript

ENSAPQT00000044717

GTCCACGAGAAATTTTCCCACCAACATGGCTGCCATTGTGAGACAGTGTTCAAGAGTTACTCTGCGAGGTTTAACATCATTTTCCTTGCGTTCTCGTCCAGTACAGCAAGCCATTTTGTCTCCTCTGTTACGAAAGAACCTTAAGGTTGAATGGAAGGTAGATTTAAGTCCGAAATACTTCTGCAGTTACACGCCAACTGTCATTGAAAATGGTTCTCCTGAAATTCCCGCTGCCTCGAGCGGCCCTAACCAAGGCGAAGTCGGAGCAATATCAAGCGAAAGTGATGAGTCTGAATTGATTAGTGGTTCGTCAAATGATCTTTATCGTATATCTCAACGTCTTGGCTCCGTCAGGCATGAAGAAACGTTGTTACAAGCTTTTGAAATTATCAAAAATGCTGAAGAACGAGATGTTCCACCACTGTTAATTTATCAATTGATCCGAAACTGTGGTAACCAATTGTTTACATGTATGCCAGAGAAACGAACTAAACTTGTTAAACGCTTTTGGTCTGAATTGAGAGAGAAAGGTGTTCATTTTGATGTGAGCCATTATAACATGTTACTGTCTGTTTATCTACAAAATCATCATTCATTCAGTCCACTGGAGATCttggaagaaatgaaaactgGTGCAGTTGAACCTAATCAAACCACCTTAGTGCTTTTTATTCAAGCTTTTTGTGAAAGTGGAGATATGGTTGGATCCCTTGAGATGTTAGGGATGATGAAGACGTTAGATATTCCAGTCACTGAACAAGTTTATGCTTCACTCATCACTGGTTACAGTCGAAGTGGagACATGGAGAGTGCACTTGGTATCATGGAAACAATGAGAGGGAATGGTTTAGAACCTGGTTTGGACACATACATGTCATTATTAACTGCCTATAGTGAAGCAGGGGAccttgaaaatattaaaaagGTTGTTGCTGAGTTCACTGCTAAGAAAGGCATGTGTCCAGTTGGAGTACCAATGGCCATTGTTGAAGctttagcaagagcaaaacaTTACTCTCTCATTCCAGGGATTTTGCAAGAAATGAGCATTAACCAATCTGTATTCAACAGTGAGTTGATCAACGTATTGAAGAATTTGATAGCGCGAGGACTGCATGAAAATGCTCTTGAATTGCTCAAAGTCATCCCCAGAAACCACATGGTGAACAGTGAACGGGTGTCTGTCCCTGAAGTGGAGTTCATAAGACAACTGGTTCTCTCTATTCAGGAGCCCAAAATGTTGGTTTCAATGTTGAAGAAAGTCGACGATgccaaaatattaaaatctcCATACGAACTGTCTTTAAACTTTAGTTATGGAAAACACGACAAAGCTGTAAGTTTGGCAATAATTGAAGCGATGGCAAGAAAAGGTTTGACAGTCAGACCACATTACTTCTATCCCATGATGGTGAATGCAATAAAGAATAACGATGGCAAAGATGCACTTGAAACACTTTCCTTTATAAGGCAGAGAAATCTACGACTGGATAATAATCTAATTCATTATGGAAAGAAAGCACTGAAGTGGGAGAACAAGACTGCACAAGACGTCATAAGATCATTGCAAaATATTGGAGAAGACTTGCTTTCGTACCAAAGTAAAGTGACAGCATTACATCTCTTTACTGATCGACTTGATcttgatgaaattaaaaatttaaTTGAGGAAAGTGGTGATGTTGTCGAAAACGAAGCACTTATTCCATGCCTTGAGTTACTCATTAAAAGAGATGACAGAACAGCTGACGCAGTTGAAGCGATTATATTTGCTGAAAAGAAAGGTCTTGATGTTGAAAACTGTGTATACACTTTGATAAACAGAATTTCCAGAACACGCAACGCTTCTCGTAAACTCATCGATTTCATGGAAACTCTGTTTGAAAAGAACATTAATGCTGGATCTAGGGTCTTCTCGCGAGTTTTATCTGCTCTCAGTAAAGACGACACAACTGATGAATTTTTTGAgTTTCTACGCATTTTAAAACGGAATAATGTGGAACCCGATGCCAGCAGTTATCGTGAAATATTAAAGAAATCCTCAAACATGGGCAGGAAAGACGCAGCCGAATTTGCATTCAACAAAGTTAACGACGTGTTTCCCGACGATCCAGTTGCCTATTCCTACCTGCTTTTGGCTTATGCTAAAAATAACGTGGGAAATCTTGGTTTCACCACCGATTTCAAAAATCGTGCTAAGATCTCCGCGATATTTGACCAAATGATGGAAAAAGGTCTAAAACCTTTTGATGCTGCTGTGTCACATGTGATCATTGCTCATTTAACTAaaggaaatattgaaatggcGGATAAAATCAAAGAGAAATACGGCACTGGAAGTAGAGCATTCATAGTCTACGCTCAGTATCTGAGGTTCTTTGCCAAGAAAGGAGATGTACACAATTCTGAACGTATAATCTCTGAGATGAAAGAAATGCAGAGTGATATGTCGCCGTATACATACAATTATCTTCTGCAGGCTTATAGAAAACACGGAGATGTTGAGAGGATTAAGGAACTTCTcgatgaaatgaaaacgaagaacattgaaaaaattttcatgaatTATAGTGAACTAATGATGGCTCAACTTAAATGGAGTGACATTGAAGGAGCATGGCAAGTTTATCAAAAAGAATGTCAAATTCTGGAGCGATTCCCAAGTGATTCGTGTTGTGTTCATCTCATGAGGGAACTGGGCTCTAGTCGAGATATCGTCAAGCTGGATGAACTTTCCAACGACATAACGAACTCTAAGTCGCTGCCAGAACatgaaaagaataaaatgaGACATGGCTTAGTGGTCGCGTATTTGGACGCTGGTGCCGAAGACAAAGTCAGAGAAATTGTCGAAAGAGAAGACTTTAAACACGAATACAGCCATTACAAAAATGTCGCCAGAAATGCTGCAGGATTGGGAAAGGTTGAATTAATACGGAAACTTATTTCGTTTCTGGAGGAACAAGGGTTGAAACCAAGGGGATTGTATGACCCTCTTTTATATGCTTATGGCAAGAACAACGACATGAGTGGAGCGTACGCGCTTAGAGATGAGATCATCGAGAAAGGCGAGACACAAAGCACCGTGTTTGTAAAGCTGTTTGAACGGCTGGCGGAGAACTGGAAGAAAGATGTGCAGGAGGAGTCGAGCGAACCAGAAAACGTCAACTGAAGTGCATCTACCCGGTGACCATATTTGGCGGATCATGCACAGGTAACCCATATTTTGCGTGAGTTCTATCATTCATTACCTTTATCCTTctcttttaatatttcttcaaaatattaaaagcGTTTTAAAGTCGGAGAATGATTGGAATTTGCGCAAAATATGACTCATCTGTTGTGTGATTGAAGTTGTGCGTGAAGTAGGATTgtcgcttggtattgtgactTGGGATTTATTGAGAACGTTCACCCGTTTCTCTCAACTTGACTTGAAAATTTAACGTTCTTTTTAAGTTAAACCTATCAGGACATTTACTAAGTCTGCATCCACCATCAGCTACAATGATTATATTTTCTCAGTGAAGCCAATTTAgacatttcaatttttcaacgaaattttaattttaatccaAAACTGAATCATAACATCTAATCACATTCGTTTTTCCTAACATTGCACTACAAAGTTTGAGCGAATTATTTGTTTAAGTTCTTATCTCTACATTTGGGGATTAAGTATTATACTGCTATAATATTGATGATACATCTGGGGATTCTGGGCTAGTAAATCGGCAAGCCCGTGG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28C74	Leucine-rich PPR motif-containing protein, mitochondrial OS=Xenopus tropicalis OX=8364 GN=lrpprc PE=2 SV=1
Q6PB66	Leucine-rich PPR motif-containing protein, mitochondrial OS=Mus musculus OX=10090 GN=Lrpprc PE=1 SV=2
P42704	Leucine-rich PPR motif-containing protein, mitochondrial OS=Homo sapiens OX=9606 GN=LRPPRC PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004431 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF17177 all species →	PPR_long	Pentacotripeptide-repeat region of PRORP	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR033443 all species →	Domain	Pentacotripeptide-repeat region of PRORP	Interproscan
IPR033490 all species →	Family	Leucine-rich PPR motif-containing protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46669 all species →	LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003730 all species →	Molecular Function	mRNA 3'-UTR binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0070129 all species →	Biological Process	regulation of mitochondrial translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAPQP00000039712.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.