Gene detail

Detailed information of ENSAVKP00000001186.1 in Catalaphyllia jardinei

Genomic Location: chr1:1634787...1649657
NR annotation: XP_022791122.1, uncharacterized protein LOC111330520 isoform X2 [Stylophora pistillata]
Species Catalaphyllia jardinei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAVKT00000001371

ATGTCAGGCGTTTTAGGCAAATCTCTGTCGAATGCACCAAACATACAACTTCTTGAGGAAGAGCAAGCGGCAAGGAGTATTGTGGTATCAAACATATCGCCACAGACTACAAAGGAAGATGTTACTATTCATTTCCAGCGGCAGAAGAATGGCGGAGGTGAAATCAATGCTGTACACATTCCAGTAGAAGGAACAGCCGTCATAACTTTTGAGGAAAGCGAAGTGGTGGAAACAGTACTAGGACACTCTCACACACTTGGGGGATCAACATTGAAGCTCGACAGATTGATTGCAGATGATTCCCCCGAGgtTTTACAGCTAGTTAAGGCCCGTGTAAAATTTGATAGATTTCAGCTATCGTCTCAAGAATGCAGTAAAGCGCTTGAAGTTCTGAAACATAAGGTGAAAGTTCTATGTTATCATGTTCCTAATAAGGAATGTGTCCTCTCTGGAACGTTTAACCAGATTTTAACCGCCCAAACGTTTCTGCAAGACATTCTTCATCGACGATCTTCAGTCCTGCAGCAATCAATAGGAGGAAATGACGCAAGCCATCAAAGTGATACAACACAGACGCAGCAAAATTCTTCAGCAGCTTGGGACAATGATGTCACTGATAATTTTGATACTGAGGATCTCAACAGCTTTGAAGTCCAGCCACAGTTCATGAAGCTTATTATACGTGTGTACCAGAAGAAGCTTCGGTACATAGAAGAAACATACGGCTTGAATATCGTCTGGGATGAAAACGCGTCCCACGTACAAATGTGTTCCAGTAAAGCATCAAGCAATCCATGCAGTTATCAAAAAGGATGCGAAGCGTTCATCGATCTTTACCAAAGCGTTTTTCCCAACATCCGTCgagaagaaattgaaatagaaAATGTCGACAATGAGGTAATCGAGGCGATTAATTCCGTGCAAGCTGACAATAATGTGGTTATAGAAATGGCAGAAAACAAGATAGTGGTTTATGCGGAAAAGAATGAGATTCTCAGTTCTCTGCAAGCCCTAAGGGAAAAGCTTGGATTACAACAAGGTGTTAACCGGAGGACCAGACGCAGTCATCATAGAGCCACAACTCCTGGTGCTCTACAGCACAATGAGACTCTCCAGGATAATCAGTTCTCTGCTTTTCCTGCGCAGGCCTTAAAGCAGATTTTGAACAATGGAGTAAGTTTTTCGGTATATCAGAGTGATATAACTGACGAGAACGTGGATGCCATAGTCAATGCAGCCAACGAGAGACTTCTTCATGGCGGTGGTGTGGCAGCTGCAATAGTGCTCAAAGGAGGTCGTCAGATAGAGGAAGAGTCCAGACAAATAATGATGCACAGAAATAAGCGGCCGCTTAACGTAGGCGATGCTGTATATACCAAGGGTGGCAATCTTTCTTGTCGATATGTCATACACACGGTGGGTCCGAGATGGAATGATCATAACAGACAAAGGAGCATTTCGCTTCTTCACCGAGCTTGCATAGAAAGCCTCTATCTTGCAGCAGAGTTGAAGCTTTCTTCCATTGCCCTTCCAGCAATAAGCTCTGGTATTTTCGGCATGCCAAAAAGCCTTTGCGCCCAAGTGATGTTCAAAGCAATCGAGGAATTTAGCTCAAGCACTGACTCCAAATTCAACACTCTCCGTGACGTGCGTATTGTTATCATCGACGATGAAACGATCAGTGCCTTCCGTGAAGAGTTTGTGAAACGCTACACTTCTCAAGAAGGGCCAGCAACACATTCGGAACATCATCCACGCACACCAAATGAGGAGCAAACAGTTTCTTCCGCCTTAAACGTCTCTGTAAAAGATCGTTCCCTTTATTCATTCAACGGTTCATCAGAGGAACAATCCAAGAAGAGCGGTGAAGACAATTCCATTGTCGAGTCACCAAATGAGGGAGCTGATGCAAACGTGGAGAGAAAATATGTGGACACTGGCCTACACggcacaaaaaaagaaaaaagcttaGGAGACTCTCCTTTAGCATCCAACNNNNNNNNNNaaaaaagaaaaaagcttaGGAGACTCTCCTTTAGCGTCCAACAAGAGCGACGAGGCCAGTGA

Transcript

ENSAVKT00000001371

GTTAGTGAGATCGTCACTGACTgatgttcgcaggctagtcacCGATTTGCATGTAGTTTGCGTGGCCGTAACCCAAAATGTCAGGCGTTTTAGGCAAATCTCTGTCGAATGCACCAAACATACAACTTCTTGAGGAAGAGCAAGCGGCAAGGAGTATTGTGGTATCAAACATATCGCCACAGACTACAAAGGAAGATGTTACTATTCATTTCCAGCGGCAGAAGAATGGCGGAGGTGAAATCAATGCTGTACACATTCCAGTAGAAGGAACAGCCGTCATAACTTTTGAGGAAAGCGAAGTGGTGGAAACAGTACTAGGACACTCTCACACACTTGGGGGATCAACATTGAAGCTCGACAGATTGATTGCAGATGATTCCCCCGAGgtTTTACAGCTAGTTAAGGCCCGTGTAAAATTTGATAGATTTCAGCTATCGTCTCAAGAATGCAGTAAAGCGCTTGAAGTTCTGAAACATAAGGTGAAAGTTCTATGTTATCATGTTCCTAATAAGGAATGTGTCCTCTCTGGAACGTTTAACCAGATTTTAACCGCCCAAACGTTTCTGCAAGACATTCTTCATCGACGATCTTCAGTCCTGCAGCAATCAATAGGAGGAAATGACGCAAGCCATCAAAGTGATACAACACAGACGCAGCAAAATTCTTCAGCAGCTTGGGACAATGATGTCACTGATAATTTTGATACTGAGGATCTCAACAGCTTTGAAGTCCAGCCACAGTTCATGAAGCTTATTATACGTGTGTACCAGAAGAAGCTTCGGTACATAGAAGAAACATACGGCTTGAATATCGTCTGGGATGAAAACGCGTCCCACGTACAAATGTGTTCCAGTAAAGCATCAAGCAATCCATGCAGTTATCAAAAAGGATGCGAAGCGTTCATCGATCTTTACCAAAGCGTTTTTCCCAACATCCGTCgagaagaaattgaaatagaaAATGTCGACAATGAGGTAATCGAGGCGATTAATTCCGTGCAAGCTGACAATAATGTGGTTATAGAAATGGCAGAAAACAAGATAGTGGTTTATGCGGAAAAGAATGAGATTCTCAGTTCTCTGCAAGCCCTAAGGGAAAAGCTTGGATTACAACAAGGTGTTAACCGGAGGACCAGACGCAGTCATCATAGAGCCACAACTCCTGGTGCTCTACAGCACAATGAGACTCTCCAGGATAATCAGTTCTCTGCTTTTCCTGCGCAGGCCTTAAAGCAGATTTTGAACAATGGAGTAAGTTTTTCGGTATATCAGAGTGATATAACTGACGAGAACGTGGATGCCATAGTCAATGCAGCCAACGAGAGACTTCTTCATGGCGGTGGTGTGGCAGCTGCAATAGTGCTCAAAGGAGGTCGTCAGATAGAGGAAGAGTCCAGACAAATAATGATGCACAGAAATAAGCGGCCGCTTAACGTAGGCGATGCTGTATATACCAAGGGTGGCAATCTTTCTTGTCGATATGTCATACACACGGTGGGTCCGAGATGGAATGATCATAACAGACAAAGGAGCATTTCGCTTCTTCACCGAGCTTGCATAGAAAGCCTCTATCTTGCAGCAGAGTTGAAGCTTTCTTCCATTGCCCTTCCAGCAATAAGCTCTGGTATTTTCGGCATGCCAAAAAGCCTTTGCGCCCAAGTGATGTTCAAAGCAATCGAGGAATTTAGCTCAAGCACTGACTCCAAATTCAACACTCTCCGTGACGTGCGTATTGTTATCATCGACGATGAAACGATCAGTGCCTTCCGTGAAGAGTTTGTGAAACGCTACACTTCTCAAGAAGGGCCAGCAACACATTCGGAACATCATCCACGCACACCAAATGAGGAGCAAACAGTTTCTTCCGCCTTAAACGTCTCTGTAAAAGATCGTTCCCTTTATTCATTCAACGGTTCATCAGAGGAACAATCCAAGAAGAGCGGTGAAGACAATTCCATTGTCGAGTCACCAAATGAGGGAGCTGATGCAAACGTGGAGAGAAAATATGTGGACACTGGCCTACACggcacaaaaaaagaaaaaagcttaGGAGACTCTCCTTTAGCATCCAACNNNNNNNNNNaaaaaagaaaaaagcttaGGAGACTCTCCTTTAGCGTCCAACAAGAGCGACGAGGCCAGTGATAATGTCGAATATTCAAATGAAGGAGTTGGTCCAAACGTTGAAGACAATGAGCACCATGAGAGGATACCCGCCGGCATCAAGGAAGAGCCTTCCAACAACAGTAATCCTCCAAATGAGAGCAAAGACAATTCAGCCAATAGCAACGAAAAGTCAAAAGCAGAGACTGAAGTTCATGGCTCGAACATGGGAAAACATATAAAAGGCTCTTATCTTGTAAAAAGTTTAAGGCCATCAAACATGGGTACTGTAACTAGACCGTCGTCTGGACGGGGAAGAGGCATTCTGGCAGCTAATTTTTATGGCAGACTGCAGCAAAAAGCATCAGGATCTGAGTCAAATGAAAACACTGAATTAGCTACAACGAGGAAAACGAAGGTTACTTACATTGGAAAAGGTAGGGCCATCACATTTGCTACTAAAACCTCTCCACCTGGACTAAGTGTTACAGAGGAAGGAAAGCGTCTTGCACGAGACGTTAGTAACGGAGTGAAAGGCGATCAGAGCACTCATACTGCTGAATCAGTGAGGGGCAAAGAAGAATTGGAGATAAAAGAATTTAGTAACGCACCTTTTAAGGAAGAAGACCAAGAATTAGAAGATAATTATCAAAATACTGATAACGATAGGGCAATTGGTGTGTCTGGCAGCAAATTACCACATAAAGATGGAATTGCCGACATGGAAGAAGCCAAGGAAGACACCATCGAAAAAACTACAACTGACGATAGAAGAAAACTCCCAACAAATGAGAGTACCAACAACCTCGCCGCACCAAATCAGCCCGACAATTTGGAGGAAACAGGAGTTCAAGCTGGCCATTCAAGTTCTAACGCAACATGCGATGAAGCATCGTATCCCAAGGAACCATTGCCTTTTAGTCACCCTGGAACTTCTCCTGCATCCGAGAACTTAACTCCGGCAGCTTCTCATGAAAGTGTCAATGTACGAGATGTGGTGGAAGAACGACGATCTACAGACCCAAATACAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WYX8	Uncharacterized protein TM_0508 OS=Thermotoga maritima (strain ATCC 43589 / DSM 3109 / JCM 10099 / NBRC 100826 / MSB8) OX=243274 GN=TM_0508 PE=3 SV=1
Q4J9D2	Uncharacterized protein Saci_1252 OS=Sulfolobus acidocaldarius (strain ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB 11770) OX=330779 GN=Saci_1252 PE=4 SV=1
Q8ZXT3	Uncharacterized protein PAE1111 OS=Pyrobaculum aerophilum (strain ATCC 51768 / DSM 7523 / JCM 9630 / CIP 104966 / NBRC 100827 / IM2) OX=178306 GN=PAE1111 PE=4 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002709 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01661 all species →	Macro	Macro domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR002589 all species →	Domain	Macro domain	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR043472 all species →	Homologous_superfamily	Macro domain-like	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR052056 all species →	Family	Mono-ADP-ribosyltransferase ARTD/PARP	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14453 all species →	PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0003714 all species →	Molecular Function	transcription corepressor activity	Interproscan
GO:0003950 all species →	Molecular Function	NAD+-protein poly-ADP-ribosyltransferase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0010629 all species →	Biological Process	negative regulation of gene expression	Interproscan
GO:0044389 all species →	Molecular Function	ubiquitin-like protein ligase binding	Interproscan
GO:0060335 all species →	Biological Process	positive regulation of type II interferon-mediated signaling pathway	Interproscan
GO:0070212 all species →	Biological Process	protein poly-ADP-ribosylation	Interproscan
GO:0140289 all species →	Biological Process	obsolete protein mono-ADP-ribosylation	Interproscan
GO:1990404 all species →	Molecular Function	NAD+-protein ADP-ribosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000001186.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →