Gene detail

Detailed information of ENSAVKP00000001493.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020624497.1, cleavage and polyadenylation specificity factor subunit 2-like isoform X3 [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000001728

TGATTGGAGGAACAATGTGGAAAATTGTCAAGGATGGAGAAGAGGACATTATTTATGCTGTGGATTACAATCACAAGAAAGAAAGGCATCTGAATGGAGCAGTTTTGGAAACTCTTAGTAGACCCTCTTTACTCATAACAGACAGCTTTAATGCACTCAATGTGCAAGCCAGAAGAAGGGAAAGAGACACCCAGCTCATGAGATCAGTTGTGGCGCAACCCGGATTCAGGATTATCAGCATACTCTCTTGCAATGCTCAACAATGTCAGCTACAATGTGGTGGAATTTGCTAAGTCACAAGTGGAATGGATGAGTGACAAAGTTATGAAGTCATTTGAAGTTGGCAGGATGAATCCTTATCAATTTAGGCACTGTTCTCTGTGCCACAGCTTGGCAGACCTTGCTAAGGTCCCTGAACCTAAAATTGTCCTCGCATCAGTTGCAGATTTGACTTGTGGCTTTTCACGGGAGCTGTTTATCAAATGGGCAGAGGATCCAAGAAATACAGTTGTGTTCACCTGCCGTCCTTCACCTGGGGCACTGGCTCGCACTTTGATTGACAACTTACAGCAAAAGACAATAGACATAGAGGTGAAAACAAGAGTTAGGCTGGAAGGAGAGGAACTTGAGAGATatctagaaaaagaaaaagagaaggagAAAAGCCGACCTGTGACTGATACAGCAGACAGGAGTCATCGGCTGGTAGCAGAGGagagtgacagtgacagtgacgaAGATTTAGAAGGAGCTGTAAGGCATGATCTTATGATGGCTGATGAAAAGgGTGGTCGTAAAAGCAGCTTTTTTAAACAGGCCAGATCTTACCCCATGTTTCCGTGCCATGAAGAAAAAGTCAAATGGGATGATTATGGAGAGTTTATCAAACCTGAAGATTTTATGGTCAGAGAGTTAGCGGcagcagaagaagaaaaagccaAAGTGGAGcaaagtaaaaaagaaactgTGGATACTGAGGCTCTCGCTGGACAGGggGAACTGGCGAAGGTGCCAACGAAGTGTGTTGTAGACAAAAGACAGCTTAACCTTAGATGTTCTATGTTGTATATCGACTTTGAGGGCAGATCAGATGGCGAGTCCATAAAGAGAATTCTTTCACTTGTGAATCCAAGGAATCTTATTCTTGTGCACGGTGAAGCGGAAGCTACAGAACACTTGGCTGAGTACTGTCGGCAGACCAGCAGCATTCAAGTAAACCAGGTGTTTACCCCAAGATCTGGAGACACTGTCGACTCTACTGGAGAAAGATACATTTACCAGGTCAAGTTGCGTGACGCGCTGGTTAGTTCGTTACAGTTTTCTCGCGCGCGTGACGCGGAACTTGCTTGGGTGGATGGACAGCTGCACATGAACGCTTCCCACTCGCACGTGGGTTTGGTTCTAGAGGATGGGGAATTGCGAGACGAGGACGAAGGTCAGGAGAAAATGGAAACtgatcaaagtggtaaggaggAGCCAGTGGATACGGTACCTGTGTTAGAGCAACTTCCGTTGTCTGAGATCACTGGACACACCTCGGTGTATATCAACGAGCCACGCCTGTCAGATTTTAAGCAGGTGTTAAACAAGGCCGGTATTCAGGCGGAATTTGCTGGCGGCGTTCTGATCTGTAACAATGTTGTTGCGGTCAGAAGGAACGAGACTGGTCGCGTGGGACTGGAAGGAGCTGTGTGCGATGACTATTACAAGATCCGGGAACTTTTGTATGAACAGTACGCTGTTGTGTAAAGGAAGCAGTTCTTTCGCACATCTTAGTTGTTTTGAAAAGCACTGCGAAAAACACCATTGGTAGACATAAAGAAACTGCTGAATGACTGTAGTTTGAGAAGTTAACGGGTTTGTTTAACAGAAAAGTTTGCAGTGCCTGAGAAAATCCTGTCTGTAATCTGCAAGAGACTTGGAGGAGACTGTAGGGCCAGGAACACTCTGTCGTGTGCGCTTGAATCTCTTAAAGTCTTGTCTAGATAGTGTTTGAAGGAGGAGCAGCAGGAAAGCGAGGAACACAAACACGAGGACCAGGAGCAGATGGAGGGAGACCAGAGTGAGAAAGAGCTGGTGGTGATTTTGTGAATGGTTTGACCGTTGATAGTGATATAACGTTGCTTAGAACTGGATTCtcattacaaaaataaaactcGCAATGTTCAAAATCACCTGTGTTCGATGCCAGAGCTCAAAGACATAGCACAGCGTCTTATGAAGCTCAACAAGAACCGATACTTCGTCAAATCGATTGTTTTGATGACAGAATTCTGTCCCAGTGGACAGTGTTGCTCCCGTCGTTGTAAAAGGAAACGTTTTATCGTGGATATTTTTAACGTAAAACCTTAGATCTACAATTGTCTATTACAACAAGAACAGTAAGAGACATTTAAGGTGAAGCGCCTAATTTCctgttaataaaaaaatgtatatcATTTCTTGTACTTATGGAACCATTTTCGTAATATTACTattgccgtgttttcacgagagaggtttactacggttactgcttaccgaggtttcgtaactaaatcgcagttattagagacgctgtttacacggaactaataaagtagg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10568	Cleavage and polyadenylation specificity factor subunit 2 OS=Bos taurus OX=9913 GN=CPSF2 PE=1 SV=1
O35218	Cleavage and polyadenylation specificity factor subunit 2 OS=Mus musculus OX=10090 GN=Cpsf2 PE=1 SV=1
Q9P2I0	Cleavage and polyadenylation specificity factor subunit 2 OS=Homo sapiens OX=9606 GN=CPSF2 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004914 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13299 all species →	CPSF100_C	Cleavage and polyadenylation factor 2 C-terminal	Family	Interproscan
PF10996 all species →	Beta-Casp	Beta-Casp domain	Domain	Interproscan
PF07521 all species →	RMMBL	Zn-dependent metallo-hydrolase RNA specificity domain	Motif	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR027075 all species →	Family	Cleavage and polyadenylation specificity factor subunit 2	Interproscan
IPR022712 all species →	Domain	Beta-Casp domain	Interproscan
IPR025069 all species →	Domain	Cleavage and polyadenylation specificity factor 2, C-terminal	Interproscan
IPR036866 all species →	Homologous_superfamily	Ribonuclease Z/Hydroxyacylglutathione hydrolase-like	Interproscan
IPR011108 all species →	Domain	Zn-dependent metallo-hydrolase, RNA specificity domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45922 all species →	CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR SUBUNIT 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005847 all species →	Cellular Component	mRNA cleavage and polyadenylation specificity factor complex	Interproscan
GO:0006378 all species →	Biological Process	obsolete mRNA polyadenylation	Interproscan
GO:0006398 all species →	Biological Process	mRNA 3'-end processing by stem-loop binding and cleavage	Interproscan
GO:0098789 all species →	Biological Process	obsolete pre-mRNA cleavage required for polyadenylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000001493.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.