Detailed information of ENSAVKP00000002467.1 in Catalaphyllia jardinei

Genomic Location: chr1:19443073...19456258
NR annotation: CAH3041771.1, unnamed protein product, partial [Pocillopora meandrina]
Species Catalaphyllia jardinei · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q6PC72Calcium and integrin-binding family member 2 OS=Danio rerio OX=7955 GN=cib2 PE=2 SV=1
Q9W2Q5Calcium and integrin-binding family member 2 OS=Drosophila melanogaster OX=7227 GN=Cib2 PE=3 SV=3
C7A276Calcium and integrin-binding family member 2 (Fragment) OS=Ovis aries OX=9940 GN=CIB2 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002704 (this species only) · gene tree & orthology

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13499
all species →		EF-hand_7EF-hand domain pairDomainInterproscan
PF03131
all species →		bZIP_MafbZIP Maf transcription factorCoiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR051433
all species →		FamilyCalcium and Integrin-BindingInterproscan
IPR002048
all species →		DomainEF-hand domainInterproscan
IPR008917
all species →		Homologous_superfamilyTranscription factor, Skn-1-like, DNA-binding domain superfamilyInterproscan
IPR004826
all species →		DomainBasic leucine zipper domain, Maf-typeInterproscan
IPR004827
all species →		DomainBasic-leucine zipper domainInterproscan
IPR018247
all species →		Binding_siteEF-Hand 1, calcium-binding siteInterproscan
IPR011992
all species →		Homologous_superfamilyEF-hand domain pairInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45791
all species →		CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000287
all species →		Molecular Functionmagnesium ion bindingInterproscan
GO:0005509
all species →		Molecular Functioncalcium ion bindingInterproscan
GO:0055074
all species →		Biological Processcalcium ion homeostasisInterproscan
GO:0003677
all species →		Molecular FunctionDNA bindingInterproscan
GO:0006355
all species →		Biological Processregulation of DNA-templated transcriptionInterproscan
GO:0003700
all species →		Molecular FunctionDNA-binding transcription factor activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSAVKP00000002467.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

AnalysisWhat it doesStatus
Primer designDesign PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.template foundopen →
BLASTSearch this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.template foundopen →
Expression heatmapDraw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.no expression matrix–
Gene family / orthogroupLook this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.open →
Gene set analysisStart a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.open →
TOP