Gene detail

Detailed information of ENSAVKP00000005760.1 in Catalaphyllia jardinei

Genomic Location: :...
NR annotation: XP_020602850.1, regulation of nuclear pre-mRNA domain-containing protein 1B-like [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAVKT00000006118

TATGATTTTACTATAATACTGTTTTGGTTGTAATAGTTTTCGATCTCGGAGAAGTATATGTGTGAAGATGACGTCTTTTTCCACTGCAACGCTGGAGAAAAAATTAGCTGATCTTTCCAACACGCAGCACAGTGTTCAGACGCTCTCGCTGTGGCTCATTCACCACAGAAAACACGCCAAATCGATCGTACAAGCTTGGTATAAAGAGCTCGCTAAAGCAAGGTCAAGCAAAAAGCTCACATTCTTATTTCTTGCTAATGATGTCCTTCAAAATGGAAAAAGGAAAGGGACAGAATTTTTGAGTGAATTTAAACATGTGTTGCCTGCTGCTTTTCAGCATTGTGCACAGGGTGGAACAGTAGAAGCCATCAAAGGTCTGGAAAGACTCATCTCCATATGGACAGAGAGAAATGTGTATGATGCAACTTTCTTAGTGAAACTTCACAAGTGTCTAGgtCAAGAATCAGACTCGCCACCACCAGAGAAGAAACAAAAGCTTCAAGATGAAAAACAAGCTCCACTAATGGAGCCACCAGATCCTGAGGATCTAATTAAGGCATTGATGGAGCTTGAAAACTCTGCTTCACAAGATGCTGTTGTTAGAGAAAAGATTGCTAATCTACCAGCAGAAGTACAAGACGTCTCTCTTTTGGACAAAATAGAAGATAAAGAAACTGGAGACCGTCTTTCCAAGATTGTTGACGAGGCTTGTTTATTACTTGCTGACTACAATGGTAGACTTGCAGCAGAACTCGAAGACAGAACAACAATATCTAAAATGCTAGCTTCATTTATACAACTTCAAAAGGACAAACTTGCAGAGTCAGAGAAAAAACTTGAAGAATACAAAGCCAAACAGGAAAAAGTTCAGCTAGTGAGACAAGAACTCAAGTCCCATTTAGAAAACCTTCCAGACCTGACCAAGCTTCCTGATCTTGGAGGAGGTCTCGCCCCCTTGCCTTCTGCTGGCGATTTATTTGCTTCTGCTCAAAGATCATGACAGTGGTTAGTTCTGCTCAAGAACTACGAGATAGGACTTGAAAAACCTGAGACATGTTCTTCATAATGTTTGACTgctatatataattttaatagTTTATACATATTTCttgatatacatgtacttttaaTTGTGCCTGGATTGATATGAATAGATGTTGTGCTGTTCATACTCAGTTCTTCCCTTGCTAGAAAAAAGTCTGATATTCCACTCTGACAGATTACAAAATAAATACATTGGAATCAAATTTCTCTAAACCTCAATTCCTCAAACCCTGGCCAAAAGAAATCTTCCTTAGAAATGTCTCACTGCAATCGAATTCCTGATTTATCAAATTAAGAGTCATCCCTTGGATGTGCTTCACTGCAATTTTCCCCATGATATCTTGGCAAACTCGTTTACTTTCCCATACCAATGCATATTTTCCTTGGTGGTTAGAGAAATCCAATTCAGCTGTATTCAACTCTGTAGagatcatatcctttatctgaTTACGTCCCAAGGTAACAGTAGTTAGCAGGGTTAAAGATTACCCCATTTAAGTGAGTCTTATGTTAAACTCAGTATAcacattgtgcagttccagaaattattcataccccccccccccattcaGAGAGGGTTGGAATTTCCTGAGGTTGGGATAGGTTTTCTAAGACCAAACGGAAATTAATGAAATGTTTGATGCTTACCAGCAGTTAAAATTTCCAGAGCCTGACTGGGCGGGGGGAGTCTtagaaaaatcccttctgtgggggaggtattGACATTTTCtgaaactacacaaaacataaaCTGCTAGGAGTCATATGCTCCCCTAATAGTCTTGATCCTTACGTTACAATCCTGTGTGAGTAAGCTAGATTGTTAGACTTTTAATATTAAATAGAAAAGTAGGGTTGTTCACAATAGTTGGCTGCTGCCGAAAATTGCAACCTATTTCATGAATTGCTTGCTGTTAGCTTGATTTTTTCATCTACTTTGTAACAGCCCTGGaag

Protein

Uniprot

Uniprot term	Description
Q9NQG5	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Homo sapiens OX=9606 GN=RPRD1B PE=1 SV=1
Q9CSU0	Regulation of nuclear pre-mRNA domain-containing protein 1B OS=Mus musculus OX=10090 GN=Rprd1b PE=1 SV=2
Q0P5J9	Regulation of nuclear pre-mRNA domain-containing protein 1A OS=Bos taurus OX=9913 GN=RPRD1A PE=2 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04818	CID	CID domain	Repeat	Interproscan
PF16566	CREPT	Cell-cycle alteration and expression-elevated protein in tumour	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006569	Domain	CID domain	Interproscan
IPR008942	Homologous_superfamily	ENTH/VHS	Interproscan
IPR032337	Domain	RPRD1A/B, C-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12460	CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0000993	Molecular Function	RNA polymerase II complex binding	Interproscan
GO:0031124	Biological Process	mRNA 3'-end processing	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K15559	RTT103; regulator of Ty1 transposition protein 103	-	Transcription machinery	ko03021	deepkoala