Genomic Location: chr10:27615314...27628071
NR annotation: XP_020600859.1, nucleoside diphosphate kinase 7-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families
| CDS |
| ENSAVKT00000012934 |
| Transcript |
| ENSAVKT00000012934 |
| Protein |
| ENSAVKP00000012113.1 |
| UniProt accession | Description |
|---|---|
| Q9Y5B8 | Nucleoside diphosphate kinase homolog 7 OS=Homo sapiens OX=9606 GN=NME7 PE=1 SV=1 |
| Q9QXL8 | Nucleoside diphosphate kinase homolog 7 OS=Mus musculus OX=10090 GN=Nme7 PE=1 SV=2 |
| Q9QXL7 | Nucleoside diphosphate kinase homolog 7 OS=Rattus norvegicus OX=10116 GN=Nme7 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003951 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00334 all species → | NDK | Nucleoside diphosphate kinase | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR034907 all species → | Domain | Nucleoside diphosphate kinase-like domain | Interproscan |
| IPR036850 all species → | Homologous_superfamily | Nucleoside diphosphate kinase-like domain superfamily | Interproscan |
| IPR023005 all species → | Active_site | Nucleoside diphosphate kinase, active site | Interproscan |
| IPR006602 all species → | Domain | DM10 domain | Interproscan |
| IPR001564 all species → | Family | Nucleoside diphosphate kinase | Interproscan |
| IPR011410 all species → | Family | Nucleoside diphosphate kinase 7 | Interproscan |
| IPR037993 all species → | Domain | NDPK7, second NDPk domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR43109 all species → | NUCLEOSIDE DIPHOSPHATE KINASE 7 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0004550 all species → | Molecular Function | nucleoside diphosphate kinase activity | Interproscan |
| GO:0006183 all species → | Biological Process | GTP biosynthetic process | Interproscan |
| GO:0006228 all species → | Biological Process | UTP biosynthetic process | Interproscan |
| GO:0006241 all species → | Biological Process | CTP biosynthetic process | Interproscan |
| GO:0005524 all species → | Molecular Function | ATP binding | Interproscan |
| GO:0005813 all species → | Cellular Component | centrosome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00940 | ndk, NME; nucleoside-diphosphate kinase | EC:2.7.4.6 | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
