Gene detail

Detailed information of ENSAVKP00000012792.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020628865.1, E3 ubiquitin-protein ligase RNF220-like isoform X1 [Orbicella faveolata]
Species abbreviation CJARD · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000013678

TCGTAGACGTCCGGTCCGACCAACTAAGTGGTTTACAAAGCTCTTTGCTTTATTGGTAATTTCGAGTTTGGTTAACGCGAACGATCTGAGTGTGCGAATCGGGCTTTGATTATCGGGAGCCTTGCGACTGCCCTTTTCAGATACAGTACAGAAATCGTGGAAAGTGGAATTCACTAATACAAAAACCCTCGCTGAACACAAATTGTCTGGTGCCTGTTGAATGCTGAGGAAATTCGCAGAAATTTCGGTGCCTGCGGAAAATGTCTTCATGACGGACTGGATAAAATTTAATCTATCAGATGGAAAAGCTCAGTGGACCAGCTTATATACCTAATCCTCTGACGTCTCCTGCACTTATGGTACTTGCGTCGACTGCCGAGGCTGCCCGTTCTACAGCATCATCTCCAGGACCTATGAATGATTATCATGCAGTGTATTCCTCACCATCTAACCGCTACATTGATGGTGAAGCTGTTCACAGGATGGTGTTGAACTCGACACATTATCAACACAGGTCTTCACATCTTGCCCTTTATCCTGGTACAGAACACTATGCAGAAAGAATGCCGCATGAATTTGGCCCTCATTTTCTTCAACTACATCACCATTTAGGAGGAGGGCTTCTTCACAAAACAAGCGGACCTACTGCAGTGTTTAATGGAACTGGTGCGTTCCGCAGGGTCGTCCCCCCTGAACATGCGTTTCCTTTTCATCATTTACAGCATCAGCGAAACTTGTTGGAACGTGAACACCATGTTGATAGCTTGTACAAAAGCCCGGAACTTGAGAAAGAGGCAAGCTTAGATAGGACATCGAAAGAAAGGATTTCCCCGCGTAAACCTGAGAAGGACAGTGACATACGTATGAAAGGAGATCAACCTTTGAGCCCTAGCCCAAGAAGACCCAGCTCTCACGAAGATTCTGATAACAATAACATTGAACCTGTGAGCATCAAAAGAGAACATACAGAGCAATCAGAATGCTGTAAAAGCAGCGAAACTGATGATACAGAGGCCAGTGTGGACTCACAATCAAAAGGAAGGCGGAGATCGTCATCAGCACAAGCACCATGTTGTCCTATATGTGGCACTAGCATCAGGCCTGGTGAAATGGAGAGCCACTTTGCTTGGGAAATGGAAAGATTCTGTGATGAAAACAGAAAACTCAGAAGAAGTCAGAGAGAGTCTGCCATGCAAGCACGGAAGAATGGTGAAGCCTACCAGAAGAAGGTAAAACAGGAATTCAAAGGAAACCCTTCAAATCACCCTGATGACACTCCAGCCAGTACCAGACAGCAGACCTACTTAAGAGTGTGTGCCAACAGAATGGCAAGAAGTGGCCGTTCAACACCGCTTAAGCCAACAAGGTCCAGAAGCTCTCAAAGCTCACCAGTGAATTCACCTCTTGGTGGAGAGGAAGGGCCATCGGGAATCAAAACGACATTGTGTCCTGTGTGTGAAGAAGTGATTCATGGAAATGGAGATGAGTTAAATTCTCATGTGGAAACTTGCTTACGAAAGAAAGAGGGTGGTAGTGTTGACGACATTGATGACACTAATGGCCCGGATGTGTTTGAAGAATATGAGTGGGCTGGACAAACCAGAATACGAGCCACAACTCTACTGGAAGGAGGCTTTAGAGCATCTGGTTTTCAAACGGGTATTAAGCGGAAGAGAGAGGAAGAAGACGATGGAGATCTTAATATTGATGGCGATGATTCTGAAGAGTATGGAAAACCTCAGTATCCTATAAAACTGGTTTACCCCTCTGTCAGGCTGGTTTACTTTTCTGTCATATTGGTTGCCCTCTCTGTCAAACgtttttcttctctctctgtCAAACTGGTTTATCTCTGTCAAATGGGTTTATTTCTTTGTCAAACTGGCTTCTATATTGTGACATCACTGTTTCTTGTGAGagttcaaaaaataaaaacagaaatgttattccttaaaaatttgaaatatatCCTGAgtgtgttttgttg

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DV5	E3 ubiquitin-protein ligase RNF220 OS=Bos taurus OX=9913 GN=RNF220 PE=2 SV=1
Q5VTB9	E3 ubiquitin-protein ligase RNF220 OS=Homo sapiens OX=9606 GN=RNF220 PE=1 SV=1
Q6PDX6	E3 ubiquitin-protein ligase Rnf220 OS=Mus musculus OX=10090 GN=Rnf220 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005774 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15926 all species →	RNF220	E3 ubiquitin-protein ligase RNF220	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031824 all species →	Domain	E3 ubiquitin-protein ligase RNF220, middle domain	Interproscan
IPR052443 all species →	Family	E3 ubiquitin-protein ligase RNF220-like	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13459 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000012792.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.