Genomic Location: chr14:14633324...14674757
NR annotation: XP_020627643.1, 1-phosphatidylinositol 3-phosphate 5-kinase-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families
| CDS |
| ENSAVKT00000015768 |
| Transcript |
| ENSAVKT00000015768 |
| Protein |
| ENSAVKP00000014567.1 |
| UniProt accession | Description |
|---|---|
| Q9Z1T6 | 1-phosphatidylinositol 3-phosphate 5-kinase OS=Mus musculus OX=10090 GN=Pikfyve PE=1 SV=3 |
| Q9Y2I7 | 1-phosphatidylinositol 3-phosphate 5-kinase OS=Homo sapiens OX=9606 GN=PIKFYVE PE=1 SV=3 |
| O96838 | Putative 1-phosphatidylinositol 3-phosphate 5-kinase OS=Drosophila melanogaster OX=7227 GN=fab1 PE=1 SV=2 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002136 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF01363 all species → | FYVE | FYVE zinc finger | Domain | Interproscan |
| PF00610 all species → | DEP | Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP) | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036388 all species → | Homologous_superfamily | Winged helix-like DNA-binding domain superfamily | Interproscan |
| IPR011011 all species → | Homologous_superfamily | Zinc finger, FYVE/PHD-type | Interproscan |
| IPR013083 all species → | Homologous_superfamily | Zinc finger, RING/FYVE/PHD-type | Interproscan |
| IPR000591 all species → | Domain | DEP domain | Interproscan |
| IPR000306 all species → | Domain | FYVE zinc finger | Interproscan |
| IPR043548 all species → | Family | 1-phosphatidylinositol-3phosphate-5-kinase | Interproscan |
| IPR027409 all species → | Homologous_superfamily | GroEL-like apical domain superfamily | Interproscan |
| IPR036390 all species → | Homologous_superfamily | Winged helix DNA-binding domain superfamily | Interproscan |
| IPR017455 all species → | Domain | Zinc finger, FYVE-related | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46715 all species → | 1-PHOSPHATIDYLINOSITOL 3-PHOSPHATE 5-KINASE | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0035556 all species → | Biological Process | intracellular signal transduction | Interproscan |
| GO:0046872 all species → | Molecular Function | metal ion binding | Interproscan |
| GO:0000285 all species → | Molecular Function | 1-phosphatidylinositol-3-phosphate 5-kinase activity | Interproscan |
| GO:0012506 all species → | Cellular Component | vesicle membrane | Interproscan |
| GO:0030593 all species → | Biological Process | neutrophil chemotaxis | Interproscan |
| GO:0031410 all species → | Cellular Component | cytoplasmic vesicle | Interproscan |
| GO:0032438 all species → | Biological Process | melanosome organization | Interproscan |
| GO:0052810 all species → | Molecular Function | 1-phosphatidylinositol-5-kinase activity | Interproscan |
| GO:0090385 all species → | Biological Process | phagosome-lysosome fusion | Interproscan |
| GO:1903426 all species → | Biological Process | regulation of reactive oxygen species biosynthetic process | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K00921 | PIKFYVE, FAB1; 1-phosphatidylinositol-3-phosphate 5-kinase | EC:2.7.1.150 | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
