Genomic Location: chr2:17544052...17552323
NR annotation: RMX40596.1, hypothetical protein pdam_00019929 [Pocillopora damicornis]
Species Catalaphyllia jardinei · all data for this species · gene families
| CDS |
| ENSAVKT00000017487 |
| Transcript |
| ENSAVKT00000017487 |
| Protein |
| ENSAVKP00000016149.1 |
| UniProt accession | Description |
|---|---|
| C3ZWH9 | CDGSH iron-sulfur domain-containing protein 2 homolog A OS=Branchiostoma floridae OX=7739 GN=BRAFLDRAFT_285975 PE=3 SV=1 |
| Q6PCF8 | CDGSH iron-sulfur domain-containing protein 2A OS=Xenopus laevis OX=8355 GN=cisd2-a PE=2 SV=1 |
| C1C524 | CDGSH iron-sulfur domain-containing protein 2 OS=Aquarana catesbeiana OX=8400 GN=cisd2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007507 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF10660 all species → | MitoNEET_N | Iron-containing outer mitochondrial membrane protein N-terminus | Domain | Interproscan |
| PF09360 all species → | zf-CDGSH | Iron-binding zinc finger CDGSH type | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR045131 all species → | Family | CDGSH iron-sulfur domain-containing protein 1/2 | Interproscan |
| IPR042216 all species → | Homologous_superfamily | MitoNEET, CDGSH iron-sulfur domain | Interproscan |
| IPR018967 all species → | Domain | Iron-binding zinc finger, CDGSH type | Interproscan |
| IPR019610 all species → | Domain | Iron sulphur domain-containing, mitoNEET, N-terminal | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13680 all species → | CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005741 all species → | Cellular Component | mitochondrial outer membrane | Interproscan |
| GO:0010506 all species → | Biological Process | regulation of autophagy | Interproscan |
| GO:0051537 all species → | Molecular Function | 2 iron, 2 sulfur cluster binding | Interproscan |
| GO:0043231 all species → | Cellular Component | intracellular membrane-bounded organelle | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K23882 | CISD2; CDGSH iron-sulfur domain-containing protein 2 | - | Membrane trafficking | ko04131 | deepkoala |
Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
