Gene detail

Detailed information of ENSAVKP00000018229.1 in Catalaphyllia jardinei

Genomic Location: :...
NR annotation: XP_020605801.1, doublesex and mab-3 related transcription factor 3, truncated-like isoform X2 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAVKT00000019578

CTATCTGGATTAAGGCACGCTCGATAAGATAAATTCCAAACCAGAAGCATAGCTTTGTCGTGTTTATACTAGGGTTGCCATGAAGAAATCACAGTGTGACGCTTACTTTAATCCCGCATAATTTCAGCTTGGAAATCTGTCACAAATTTGGCATATAAACAGCGCGCAATGCTTGATGGGCATGGTTGACACGAACAGCTAACGCTTTTGGACATCACTTCCGGTTAATCTTTAGAGAGCATAAATTGACAAATTTCAATTAAAGTGCGTTCTCAGTGGAAGTTTTTGGAAGGTTACACATGTCTTGGTCAGTTGATGTCATCTTCAATCATTCTATGAAAAGGATGAGTGAAATACTCCCTCAGGTACCCTCCCCTGGTAGCGCCTTGTACCACCGCATTCCAAAATGCGCGCGCTGCCGTAACCATGGTGCTCTATCGTGGCTCAAGGGACACAAACACTACTGCAGATGGAGGGACTGTACTTGCTCCAAATGTCTCCTCATCGCTGAGCGCCAGCGAATAACGGCCGCTCGAGTGGCTCTTTTGCGACAACAGCGAAAAAACTCAGAAATGACGCACAAAATGGCAGCCAAGGATGGCGACAAGGAACAAGTGGGAAAAGGTTTTGGAGAAGATGTTTATCAAAGACCTTCAATGGTGCTTAACTCGGTGTCTACCATACATGGGAGGAACGATAGTGATACAGATTATGAGGACGAAGGTATCGATCAGCAACTGTCTCCGACGGCATCCGAAGAAAACGCCAATTCTCAAACCGAACAGCCTTCCGAACCCGAACCGACGATAATCGACGGGGTTCGAATTAAAACCGAACCGGAGAAAACGCCCGAGAAAGAGGAAGAAGGGAACACGATAGTCACACCGAGTGAAAACGGGACTCAACTTCACTCTCCGAAGAGGAAAATCAACGGAGAGATGCAACACGATGAAATCGATGTGCTCCGACTTCACCCGAAGATATCCCGAACTTCAGACAGCCCAAACGCGGGCAGAAAACTGCATCAGGATCCGCTCGTGTTGCTGATGCGAGCGTTTCCGAGTCAGTGCCGAAGTGTGCTCGAGTTAGTCCTTCAAGGCTGCGGCGGAAACGTAGTCCAAGCCATTGAGTGTCTGCTTCAAAATCAGGAGAAGAAGCAGTTTCCGTTGCCGATGCCTGTTCCAGTGTTGGGAACCGTTGGGGGACCGCCCGCCACAATTCATCCAGCGCTGCATTTCCAAGCACCTCCTCTCTTTCGCAAACCGGAGCCTTTTTCGCACAGTTTCGGCCACAGGCCCCCACTGAGTCCAAGCTGCCCGTACCCACCACCACCGCCATTACTCAAACCCAAACCACAGGTCAGCGGTTATCCTTTCTCCATGGAAGCCGTCTTGGCTTCGCCCCCGAACAATGTTAGCGCCAGCTCAGGTTCTCCCAAAGGGGAAGAAAAATCGGTAATGGTACATTTTTGCACAAAATGCGGCCGAAAAGCGAATTGTGATGACAATTTTTGTGCCTTCTGCGGGCAAAAACTCcacaaataaaataatgtatAACTATTTCTTTAAGTGGGTATGTGTTGAAACGTATCTTAAAGTATCCATAAGATATTCGTaataaaagagaaaatgtattaaCCCTCAAAGTCGAATGTTCAACATGAAATTTCTCCTAACAAGTTTAGTAGAAATTGTGACACATGTGTCAGGAGAATCAAACAAATGATCGCCGCACataatttttcttttggcaGTTCAACATTTATTACCATCTTTACGAGGGGAAAATTTTTAACCGTCGAGGAGCTTTGAATGTTGGCAGTCGAACTTTAAGGGTTACTTTAAGTAACCGCAAAGGCTTTACTATTTTACTGCTGTATTTAACGAAGGGGACTGGCCTTTGTCGGGTATAACTATAGACAATGAATAGGAACTTCCTCGGATGAAATATGGAAAAGAAACAAATCGCATAATTGTAAACTCCGATTGACTACCAGAGTTTCAGATTTTTCTATGTCCATCGTCGAGGACGATGTTAAGATATCGGCTTTGTATAAAACGATAACTGAGCAAAACTGAATACCGGTTATCTGtgagaaagaaaaaactgaAACCGCCATGCATTCATAGAAGtgataaaagataattttgcatTAGAAGCTGTTATTGACGTGGGTTGTCTGAAAAGCAAGGAAACAGACCCCGAGATACGTAAGGCTTGTGAAATTTGCTCGCTTGTTGTGTGTTTGTCAGTACAGCATTATTTATTAGTGTCACAAACCTATACATATATATAGTTAATCGCTTTGGTCTCTGAGAGGCACTATCAATCTTTTCCTTGAAAAGTTTAATTCATTTTCTGTAGTACTGGTTTATAATCAAGACTAgagaaaaatatgaattataaTCAGAGATGGGGATTCGTGTGTTTTTGTTTAAGTCTACGGAAGTGTGAAAGAAGACTCAATTAAATTTCAATGCTCGATGATACCAGCATTTCCTTCGGTTGCTGGTCTTTTGTTTATGAGCTCCTTTATAAATATC

Protein

Uniprot

Gene family

Uniprot term	Description
Q76L87	Doublesex- and mab-3-related transcription factor A2 OS=Oryzias latipes OX=8090 GN=dmrta2 PE=3 SV=1
A4QNP7	Doublesex- and mab-3-related transcription factor A2 OS=Xenopus tropicalis OX=8364 GN=dmrta2 PE=2 SV=1
Q2I327	Doublesex- and mab-3-related transcription factor A2 OS=Xiphophorus maculatus OX=8083 GN=dmrta2 PE=2 SV=1

Gene family	Subfamily
Transcription Factors Family	DM

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF03474	DMA	DMRTA motif	Domain	Interproscan
PF00751	DM	DM DNA binding domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR005173	Domain	DMRTA motif	Interproscan
IPR009060	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR001275	Domain	DM DNA-binding domain	Interproscan
IPR036407	Homologous_superfamily	DM DNA-binding domain superfamily	Interproscan
IPR026607	Family	DMRT family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12322	DOUBLESEX AND MAB-3 RELATED TRANSCRIPTION FACTOR DMRT	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0005515	Molecular Function	protein binding	Interproscan
GO:0006355	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0043565	Molecular Function	sequence-specific DNA binding	Interproscan
GO:0000978	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0005634	Cellular Component	nucleus	Interproscan
GO:0006357	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0007548	Biological Process	sex differentiation	Interproscan
GO:0046661	Biological Process	male sex differentiation	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K19491	DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5	-	Transcription factors	ko03000	deepkoala