Gene detail

Detailed information of ENSAVKP00000018424.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: PFX26385.1, tRNA dimethylallyltransferase, mitochondrial [Stylophora pistillata]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

ENSAVKT00000019773

atggcggccgccATGGGGAACGTTCGTTTGCCTCTTGTGGTAATTCTAGGCTCCACTGGTACTGGAAAATCCAAGCTAGCCATCGAAATAGGTAAAAGACTAGGTGGAGAAATCCTCAGCGCTGACTCTATGCAAGTTTACAAAGGCTTGGATATTATAACGAACAAGGTTACTGCTGAGGAACTCTCACAATGCCCTCACCACTTGATCGATTTTGTGTCGCCGTTAAAAGAATTCTCTGTCGTGGAATTCCGAAATATGGCTTTACCTTTGATCGAAGACATCAAATCGAGAGGAAAAGTGCCGATAGTCGTTGGTGGTACAAACTATTACATCGAATCTGTTTTATGGGATATCTTGATTGACGAAGATGGAAGCACTAGTTCATCTAGTAGCGGAGATGAATCAGAAAAAACCGCAAGAGGTATCAAGCAGCGTAAAATGATCCAAAGTAAAGAAGTTGATTACTCTAATGATGCACTTGGTGAGACAGTAGTGGCGCGTGGAGAGACTGCTAAAGGAACTAGTCAATCTAAAGAAATGCCAGGgcatttagaaataaataatgaGTCAAGCTCAAAGACGAGCCTCTATGAAAGGCTCAGGGAGGTTGATCCAGCCATGGCAGATCGTCTACATCCAAGTGATTCCCGGAAAATTGCACGAAGTCTTCAGGTGTATGAACAACATGGTAGGCCTCACAGTAAGATTCTGCAAAAACAGCAACAGAGACAAGGGGGTAGTGCTTATGGTGGACCCCAAAGATATGAAGGCACATGTGTATTTTGGCTCCAGTGTCAGAGAGAGATCCTTAATGAGAGACTTGATAGTAGAGTTGATAAAATGTTGGATAGAGGCTTAATTGAAGAACTCTTGGACTTTCATCGTAAATACAACCATGTGTTAGACAAAAAGGATGTCGAACTAAAATACACAGAAGGTATATTTCAGTCCATTGGTTTCAAAGAATTTCATGAGTTTCTTGTCAAACAGGAGGGAAAACAGTTTGATAAAAGCAATGCATCCAAAGAGGACCAAGAACTTTTGAGAACAGGTGTCGAAAACATGAAGACAGTCACACGTAGATAtgcaaaaaagcaaatgacatGGGTGAGAAACCGCTTCTTGGCAAGGCCGAGTAGCTCTGCACCAGATGTTTATGGCCTAGATGCGACTGATCTTGAGAAATGGGACAGCAATGTTCTTAAAACTGCATTAGATATTTTAGATAAATTAATAAAAGGAGAAAGTCCACATATCAACCCCCTTCCCAGGGTGGTCATTCAAGATGATCGGCATGCAAGGCATGTGTGTGAGATCTGTGACAACCGCATCATTCTTGGTGAGGAAAACTGGAAGAAACATTTAAGGTCCAGGTCACACAAATGGCATATCAAGCGTGAGGAGAGGAACAGACATCAAAACTCTGGTTGTGAATTTAAAATGGCGGCGGCAGCAGGGAAGTTTGTTTGGTTGGAAACGCTTCGTAAAGCGACAAAGACGAGCCTTGTTCAAGATGGTCGACGTAAAGTTCATTACACTTTTCCTGATGAAACAGAGATGGTGGAAGAGTATGATTTGTCATCTGGAGAACTATTGGTAAGGAAGTGGAAGAAGACATCTAGTGTAGGAAGAGAAGGCAAGTGGGAATATGAGATAGGTGAAGACATGAGACCAGTGAACGTAGATATGGAAAATATCAGTGAAAGTAGAGGAAATCCAATTTTTACAAGAAAAGATAACAGTAAAGCATTTCAGTGGAGGATCAGAAACCTTCCCTATCCACTAAATGTGTACAGCGTGACAGTTGATGATGACAAGCAGTCCATTACATTAAGAACAAGCAACAAAAAATATTTTAAGAGATTTCATATTTCTGATATGGAAAGAGCAAAGTTAAATCTGGAACAGAGTGAGATTTCCATAGCTCATGCAAATAACACTCTCATCATAACAGTAAaatttgtGCTCCCTTCTATATCTTTCTTTTacatcctgattatgttgctgcttgcTCGCCATTACCAAAAACCCTCACTGATACTAGAACAAGAAAAGCTAGTTCGACAGGAACTTGTCAAAATGAAGTCAAGTCGTGATGGAGATGTGGAATGCAAGCCAAGCTGA

Transcript

ENSAVKT00000019773

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q80UN9	tRNA dimethylallyltransferase OS=Mus musculus OX=10090 GN=Trit1 PE=1 SV=2
Q9H3H1	tRNA dimethylallyltransferase OS=Homo sapiens OX=9606 GN=TRIT1 PE=1 SV=1
A4IHF8	Protein DPCD OS=Xenopus tropicalis OX=8364 GN=dpcd PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006450 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01715 all species →	IPPT	IPP transferase	Domain	Interproscan
PF14913 all species →	DPCD	DPCD protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039657 all species →	Family	Dimethylallyltransferase	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR026224 all species →	Family	Protein DPCD	Interproscan
IPR018022 all species →	Family	IPP transferase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11088 all species →	TRNA DIMETHYLALLYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006400 all species →	Biological Process	tRNA modification	Interproscan
GO:0052381 all species →	Molecular Function	tRNA dimethylallyltransferase activity	Interproscan
GO:0008033 all species →	Biological Process	tRNA processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00791	miaA, TRIT1; tRNA dimethylallyltransferase	EC:2.5.1.75	Transfer RNA biogenesis	ko03016	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.