Gene detail

Detailed information of ENSAVKP00000020604.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020631943.1, DDB1- and CUL4-associated factor 12-like [Orbicella faveolata]
Species abbreviation CJARD · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000022218

GCTTCGATCTAGGATGTCCTTGTTCAAACATGTGCGAACTCGCCAAGTCAGCAAAACATCGCTTAATGAATCGTTTGTGACAGGTCTCACATCAAGACACATACCTGCCTTGTTGAAAGAAAGAGAACTTTCATTGGGAAGGACAGATAAAGTTTTTGCATCGCAATGGCTAGACGACAAGAAAGTAGTTTGTGGTACAAAATCAAATGAGCTGCCGACTCTCCACATTTCTGTCCCAAATCCATACTCCAATCTTGGTGTTAAGTCTAAACGTCAAAACCATCCCACATGGAACTCTGGCTTCTTGTGCTGGACATGTTATCAGACAGGAGTCTCTCCATTCCTGTTTTGGAGGGAAGTCCTAACAGTGAGTTTCCTGAATCCAACTGTGGGATACACAGTATAAAGATAAGTCCTGCAAGAACATTGTTAGCTACAAGTGGTCAAAACCCTAATCATTTGGCAGTGTACAGGTTACCAACATTTGATCCAATGTGTGTAGGGGAGGGACATACTGACTGGATATTTTCTGTGGAGTGGATTGATGATTTTCACTTAGCAACAGGATCAAGAGATGGCAGCATTGCAATATGGTGCGTTCATGATCCAGCCAACCTTTTAGGAGATAACCAGTTTAAACTTTGTGTCAAATCCCCTGCCAACGTACTCTGCAGCGCCCTTCCTCAGGTCTATGGCAAAGATAAGATAAGAGACCTTGTCTATGAGAGAAACTCACAGACTCTAGTTGCTTTATCTGCACGTGGATATGCACAGCTCTGGGACATGAATACATGTAAAGTGAAAAGTGCATTCTCACTGAAATATCCTCAAGAAACAGTATGTCTGGCACTGGAAAAAGACAACAGATTGTTTGCCGTTGGTTCTCAGTCACATGTGTCTTTTTACGAACCAAGATGTGGAACAGCTGTAGGATATATAGGCTCACGTGATCCAGGCGCAGGTGTGCGTTCCTTGAGTTTCCGGGATCTTCTCTTGACGGTTGGTACGGGCTACGGGTCTTTGTTCTTCTTTGATATGAGAGCTTATCAGTTCTTGGGCCGAGCAGACAACGATGCAATGATTTGCTTCAAGTCAGGAAAAGGCTGGCTGcGTGAAGACCCCGCGCAAGATGGATATGACTACATGTTTGGACACACGCTGGTCTGCCGTAGTAACGCTATTTACACCCATTGTTATGATCCTACTGGAACCAAACTCTTCGCGGCTGGGGGTCCACTGTCCCTTGTCTACTACGGTAACTATGCCGCCCTCTGGGAATAACACAGAAACATTGAATTCCTGAAAATGCTAATCTTGCCACCATGGTAACAGGATTTTCATCGTACCAGCACTATGAACAGGGAACAAATGCGTCTTGACTGACCTCCATGGCACAGTGAAATGCGTCCCTGTTAGACAGAGTGTGAATTGACTATTTACACTAAAATCTGATGGCAGCTTACCTTTAATGTTCAAATTAGCCTAATATCCAGTTTTTCCGTAGGTGAAATATTGGCAGGAATGGTTGAAACCTCAAAAAATAAGGTTATAATTATAACAGACGCCTTAGTCTCATGGGGATTTTTTTAGGACTACATACAGCAGATGAAAGGGGCCTGGTTGAAGCTCAAACTCACGTGACAGCCAACTGTGCAATACATTTTTTGCAGAATTCCCGGACTACTAACAGCCTATTTCCATATTTTCAGCTTTCTTGATATCTTTTTACCTTTCCATTAACCACTTGGGAGCCCTCAGATGAGACAAAATGACGAATAAAAGACCAACTTACCCTTATATCGCCGATCCGAAACCGATAAAGCTATGGACATTGTTCggattttccgagaatttcccgGCCAGTCAGGAACCCTTTGTGAGGCCCCTCTGTGAATTTATTGTCAATCTCTAAAGGCTTATGAATACTGTGGAAAGAAATTGTGATACTGAATAGTGTAAATTGTAAGATGCTTTCCAGTTAGACTCATTTCTGGCTCCCATGAGGATAAATTATTGAAGTCAGTGTCAAATGGAAAACACAAGTAAATCGAATCATTGATgggaatttttttcatgtttacaaGTTTGTAAAACTGATGTTTTGATCAAT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5T6F0	DDB1- and CUL4-associated factor 12 OS=Homo sapiens OX=9606 GN=DCAF12 PE=1 SV=1
Q4R3J7	DDB1- and CUL4-associated factor 12 OS=Macaca fascicularis OX=9541 GN=DCAF12 PE=2 SV=1
Q8BGZ3	DDB1- and CUL4-associated factor 12 OS=Mus musculus OX=10090 GN=Dcaf12 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008207 (this species only)
Ubiquitin family	UBD\|Other\|Beta-prp · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|CDC20 · all ubiquitin genes in this species
Ubiquitin family	E3\|E3 adaptor Cullin RING\|DWD · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00400 all species →	WD40	WD domain, G-beta repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR001680 all species →	Repeat	WD40 repeat	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR19848 all species →	WD40 REPEAT PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000027 all species →	Biological Process	ribosomal large subunit assembly	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11803	DCAF12; DDB1- and CUL4-associated factor 12	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.