Detailed information of ENSAVKP00000021995.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020612391.1, U4/U6 small nuclear ribonucleoprotein Prp4-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families

 Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
O43071Pre-mRNA-processing factor 17 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=prp17 PE=1 SV=1
C4R6H3Nuclear distribution protein PAC1 OS=Komagataella phaffii (strain GS115 / ATCC 20864) OX=644223 GN=PAC1 PE=3 SV=1
Q9I9H8Apoptotic protease-activating factor 1 OS=Danio rerio OX=7955 GN=apaf1 PE=2 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004932 (this species only)
Ubiquitin familyUBD|Other|Beta-prp · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|CDC20 · all ubiquitin genes in this species
Ubiquitin familyE3|E3 adaptor Cullin RING|DWD · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00400
all species →		WD40WD domain, G-beta repeatRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001680
all species →		RepeatWD40 repeatInterproscan
IPR036322
all species →		Homologous_superfamilyWD40-repeat-containing domain superfamilyInterproscan
IPR015943
all species →		Homologous_superfamilyWD40/YVTN repeat-like-containing domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR19846
all species →		WD40 REPEAT PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0000398
all species →		Biological ProcessmRNA splicing, via spliceosomeInterproscan
GO:0017070
all species →		Molecular FunctionU6 snRNA bindingInterproscan
GO:0030621
all species →		Molecular FunctionU4 snRNA bindingInterproscan
GO:0046540
all species →		Cellular ComponentU4/U6 x U5 tri-snRNP complexInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for ENSAVKP00000021995.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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