Gene detail

Detailed information of ENSAVKP00000022862.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020603315.1, snurportin-1-like isoform X2 [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000024638

GTACTGTACATTATAGATGATTAGCAAAAGTGTGAGAGAATGAAGCAGTACATTAGCTGGTGTGGTCCTGAAGGATATCTGTCTGACCTTGTCATGGACTTCCAATTCAAACTACACAAATACTTATTAaaacataattatttaatatataatttaagTACTATCAAATATTGCttttactttgattttgacTATAAACTCAAGGGGCTGCATAAATCATGAAATTGATGGGATGTGTGGAATAAAGCCCTAAGTAATTTTTGGAAAATNNNNNNNNNNTTGCAGGAGCAGAAAAAGAAATGGAATTTGTAGAGGAACATGACAAAGATCACAGGGGAGGTTACAAAAAGAAGTTCAACCCTTATGCATATCAGCTTATGTTATCAGAGTGGCTTGTCGATGTTCCTGATGATTTAGTTCAAGAGTGGTTCATGGTTGTTTGTCCAATGGGCAAGAGAAATCTTGTTATTGCTGGAAATGGATTTACTGCTGCCTATACTAAGAGTGGCTATAGAGTGAACAAGTTTTCCTCATTACTTCCAGGAGGAAGCCCAAAGACTCTTAAACCAGGACATCACACCATCCTGGATTGTATCTTCAATGAAGTAACAAATACTTTCTTTGTGTTGGATGTCATGTCTTGGAGAGGTCACCCAGTGTATGACAGTGAGACAGATTTTAGGTTTTACTGGCTAAAGACAAAGCTTCAAGAAGAACCATTAGTAACACAAGTGTCCACTGAAAACCCATACAGGTTTGTCAGTCTGCCTTATTGCCCCTGTGATGACAGCTCCATTCACGAAGCCTTGTCCAGTGCTGCTTCAGCTTCTGAGGTCGATGGCCTGCTGTTCTTTCATAAAAGAACGCATTACACGTGTGGGCGAACACCACTGGTTGGCTGGCTAAAACCGCACATGCTTCCCGAAATTCTAGGCGTCTCCGTACCTGAAGCGTACCTGGAAAAGGCTCCGTCAGTGAATAAACTTACACTTCTCAAGTCAAACAGAGATTTGCGAGAGGGTGACGAAGAAAAAAGGATTGCTACTGAGAACTGTGTCTTGGAGGAGAAAATGGACACTCAATCTACTcagaaaacaaaacgaagacagAGAAGAAAAAATGGCAAAGGAAATGCAGCGAGAATGGAAGTGGAGGAAGATTCAACAGGCAAGCAAGAGGTTACATGCAAGGATGAAGCAGTGGATTCCAGCGTAAGAATGGAAGTTTCACAAAAAAACACTCGATCACGAGGCAGAAGGAAAAAAGAGGACAATCGAATGGATACTAGTCAAACAAACGACACTTAGTACTGCGAAGTGTTGATCAAGAGCAATACATGTAGTTCTATGTTTGGAAatgtaatttgttatttttgacAGACAACTGTATTGCTGATCCTCTGTAAACGGATAGTGCTTTGGAAAACAAAGCCACTTCCTGGCAAATTTCACTGGCGTGTTCGGAAGAGAACAGACGTGACTCGTACACTGTAAATTGAAGTCATTGATCAATCTGTAATAGCTTGATTCACCAGACGTGTTACAGGCGTAAGCGATGAGATGAAGTTAGACACAGCTGATTTCTTTGCGTTTCATGTTTTTATTGCGTTGTTGAACTTGTTCCTGGCCCCTAGTTTACTCgctttattaaaagaaaaaaataaatatgtgaCCATTGTCACCAAACTGAATTTCGGCGGGAATGTTGACACCATCTCTACACTACCATGGCTGTCTACACTACAATTTATTTAGTCGATGGTTGTTCAATTCTGTTCCTTTGAAACTGATTGGCCCGTTTAGCCGTGATGCTAATTGTGAAGAACGTACAGCTCCCGAAAACAACTGTCGGCCGACAACTGGCGTACGTTAAGATGTCGGTGAGGTGTCGCCATATTGCTAAGGTTAagtaaagcggccttcacaggGCAAACTAAAATTGGCAAATTCGTGTTGGCAACCTCAAGTtggtgtgtgtgaacggcacaaaaacagtcggcaaacaagttggcaaactgttggcgacaaaaagaacttgcctctattctcgccaactttttcaccaactttttcgtgttggtaaactcgtatctgaagTGTAAACGGTTGGCCAaaatgtgttggtaattgtcaacgaatcaaaacgagctcttttcacgtgatttattttcgtgacacttcacaaaatggggaaCGGGATCtaacactactttttaaatttgtcgaagcggttcacaatcgtccggctgtacgggacgtttcatttatagcctacaaagatactaaaaacaaacaaaacaaaacgga

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95149	Snurportin-1 OS=Homo sapiens OX=9606 GN=SNUPN PE=1 SV=1
Q5ZI43	Snurportin-1 OS=Gallus gallus OX=9031 GN=SNUPN PE=2 SV=1
Q80W37	Snurportin-1 OS=Mus musculus OX=10090 GN=Snupn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003152 (this species only)

Pfam domain

No Pfam domain signature was detected for ENSAVKP00000022862.1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR047857 all species →	Domain	Snurportin-1, m3G cap-binding domain	Interproscan
IPR017336 all species →	Family	Snurportin-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13403 all species →	SNURPORTIN1 RNUT1 PROTEIN RNA, U TRANSPORTER 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0061015 all species →	Biological Process	snRNA import into nucleus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13151	SNUPN, RNUT1; snurportin-1	-	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.