Genomic Location: chr3:9610347...9614621
NR annotation: XP_020625873.1, imidazole glycerol phosphate synthase hisHF, chloroplastic-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families
| CDS |
| ENSAVKT00000026410 |
| Transcript |
| ENSAVKT00000026410 |
| Protein |
| ENSAVKP00000024438.1 |
| UniProt accession | Description |
|---|---|
| Q9SZ30 | Imidazole glycerol phosphate synthase hisHF, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=HISN4 PE=2 SV=1 |
| Q9P4P9 | Imidazole glycerol phosphate synthase hisHF OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) OX=227321 GN=hisHF PE=3 SV=2 |
| O94303 | Imidazole glycerol phosphate synthase hisHF OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=his4 PE=3 SV=3 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0011519 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00977 all species → | His_biosynth | Histidine biosynthesis protein | Family | Interproscan |
| PF00117 all species → | GATase | Glutamine amidotransferase class-I | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR004651 all species → | Family | Histidine biosynthesis, HisF | Interproscan |
| IPR029062 all species → | Homologous_superfamily | Class I glutamine amidotransferase-like | Interproscan |
| IPR011060 all species → | Homologous_superfamily | Ribulose-phosphate binding barrel | Interproscan |
| IPR010139 all species → | Family | Imidazole glycerol phosphate synthase, subunit H | Interproscan |
| IPR013785 all species → | Homologous_superfamily | Aldolase-type TIM barrel | Interproscan |
| IPR014640 all species → | Family | Imidazole glycerol phosphate synthase HisHF | Interproscan |
| IPR050064 all species → | Family | Imidazole glycerol phosphate synthase HisA/HisF | Interproscan |
| IPR006062 all species → | Family | Histidine biosynthesis protein | Interproscan |
| IPR017926 all species → | Domain | Glutamine amidotransferase | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21235 all species → | IMIDAZOLE GLYCEROL PHOSPHATE SYNTHASE SUBUNIT HISF/H IGP SYNTHASE SUBUNIT HISF/H | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000105 all species → | Biological Process | L-histidine biosynthetic process | Interproscan |
| GO:0000107 all species → | Molecular Function | imidazoleglycerol-phosphate synthase activity | Interproscan |
| GO:0016763 all species → | Molecular Function | pentosyltransferase activity | Interproscan |
| GO:0016833 all species → | Molecular Function | oxo-acid-lyase activity | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K01663 | HIS7; imidazole glycerol-phosphate synthase | EC:4.3.2.10 | Histidine metabolism | ko00340 | deepkoala |
Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.
No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.
Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.
No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.
Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.
No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.
Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.
| Analysis | What it does | Status | |
|---|---|---|---|
| Primer design | Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed. | template found | open → |
| BLAST | Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start. | template found | open → |
| Expression heatmap | Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it. | no expression matrix | – |
| Gene family / orthogroup | Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue. | open → | |
| Gene set analysis | Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it. | open → |
