Gene detail

Detailed information of ENSAVKP00000024468.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020612277.1, helicase SKI2W-like, partial [Orbicella faveolata]
Species abbreviation CJARD · all data for this species · gene families

Sequence

CDS

ENSAVKT00000026440

ATGGAAGAGAAAGGTACAAAACAGGAGTCTGATGCCCTGGAGTATGTTTTTGATCTTCTGGAAGTTGGCTGTACAGGGACAATTGAAGTTATTCCAGAATCAGTCAATAAATCCCCTAATGAAGAACTAAAACCACTAACTACTCTTCCTTGTGGTTTACCTCCTCTGTTTGCTCCAGATTTGAAGTCTGATTTAGAGCAATATCTTTTGGATCCCACCACCCTGCCCATCCACGACTTTCACAAGACACATAggttTTGGCCCCGTGAAAGAGACCCAGAGAGTATGTTGTTTTCAGATGTCTGTCCTGTTCCATCAACATTGAAAGTAGAGAGAAATCCAACAACTGGAGAGCTCCTGGGTTACAATGAGGTGATGTTAACAGATACTGGATGCACTGCTAAGAATTCCATGTCCCTGTTACGACAGCCTGGGCCACTATCTACCTCTGTGAGAGGAGAGTCAACAAATTATCCTTTTTTACCAGGTGGTATGGAAGCTCCTGAAAGTACAAAACCAGACCTTGTGTTTGATGGAGAGCTGAACTTTGAGAAAGATCTCCTTTCTGTGCCACCAGGATTTAAACAAGGAGCTTCTTTTAGTGATGCAAAAGAGGAACAAGGAGATTCCTCTGCCTCTGTGCCTCAAGTTTTGGCCATGTCTGACATCATGGCTGGTACAACACTTGAAGACTTGGAGTACAGTGATGATGGCGATGATCTGGATTCTGATGAAGATGACATTGATCAGttgCCTGAGAAAGGAGAATCTGTTATTGACCCAGAGGACAGCACAGAAGGAGGTCTCCAGAGGCAAGATAGCCTTGAAAATGTGTTGCTGGAGGGCCAAGATAAAGAGAACAAAGTAACTTCAGCAGCTCCCGTTACAGATAAACCAGTCAAAGAGGAGTGGGCTATAATGGTGGACGTGACAGAACCTGTGAAAGATTTTCACAAGCGAGTTCCTGATATGGCCCACAAGTGGAAGTTTGAGCTGGATACTTTTCAGAAGCAGGCCGTGCTTTGTTTAGAAAACAACGAGAGTGTTTTTGTTGCTGCTCACACATCTGCTGGAAAGACTGTCGTGGCCGAGTATGCCATCGCATTGGCCAACAAACACATGACGAGGACTGTGTATACGTCACCAATCAAGGCTTTGTCCAATCAGAAGTTTCGTGAGTTCAAGGATACTTTCGAAGATGTTGGTTTATTGACAGGTGACGTGCAGATCAGACCTGAGGCGTCCTGTCTTATCATGACCACGGAAATTTTACGTTCCATGTTATACAACGGTTCAGATGCCATACGAGATGTGGAATGGGTCATTTTTGACGAAGTTCACTACATTAATGACGACGAGAGAGGCGTTGTGTGGGAAGAAGTTTTGATTATGTTACCAGCTCAAGTCAAGATCATACTGTTATCAGCTACAGTACCTAACACTCTAGAATTTGCAGACTGGATAGGACGCACTAAGAAGAAAAAGATCTACGTCATCAGTACTCCGAAGCGTCCAGTCCCCCTCCAGCATTTCCTGTACACGGGCAACAGTAACAAGACAAGTAACGAGCTGTTTATGATCGTGGATGCTAACAGTAAATTCCTGACGCGCGGTTACGATGCAGCTGTGACGGCGAAGAAAGAGAGAGAAGGGAAAGGAAAGGATGCTTATGGCTCCAAGACTCACCAAAGTAAAAATATCAAGGAGGATCGTAACATCTGGTTGTCTTTGATTGAAATGCTTCGCAAGAAGGAGAAGCTTCCTGTGGTGGCTTTTACCTTTTCACGAAAGAGATGTGACGACAATGCAGATCAACTGAGTAACCTTGACCTAACCACCTCTACTGAGAAAAGTCTGATCCATGTCTTCATTCAGAAATCAGTGGCGAGACTCAAAGGCTCCGACAGACAGTTGCCACAAGTTTCTAGGATACAAGAGCTCCTAAAGCGTGGTCTTGGTGTGCACCACAGTGGAGTATTACCCATCATTAAAGAGATGGTGGAAATGCTGTTTGGACGAGGACTGGTGAAGATACTATTTGCCACTGAAACGTTTGCTATGGGAGTGAACATGCCAGCGAGGACTGTGGTGTTTGATTCAATCAGGAAACACGACGGTTCAAACTTCAGAGACCTCCTGACCGGGGAATACATTCAGATGGCTGGCCGTGCGGGGCGGAGAGGCCTGGATCCTACAGGAACCGTTATCATATTATGTAAAGGAAATATACCTCTTATGGCTGACCTCCATAAGATGATGCTGGGAAAACCGACTCAACTGGTCTCTAGATTCCGTCTCACCTATTCTATGATTTTAAACCTCTTACGAGTGGAAGAGCTGCGTGTAGAGGACATGATGAAAAGAAGTTTTGCCGAGTTCCACATGCAGAAAGACTCGCAGGAAAGAAAACGCGAAATGGAGGAAGTagagaaaaaattacaaaatataaAAGAGGTTGACTGTACGTTTTGTGTGGACGATTTAAAGTCATATTTCAAGGATTGTCGTGAGCTGTCGGAATTGACAAGAACTGTTCAGGCAGCCATCCTTTCGTCCTCCCATGGTCAGCGGGCTCTCTCTTCTGGGCGTGTCGTGACTATAAATACCGCTGAACATAAAAATGCTTTAGCTGTGATATTACGAACTGAAAACGTCTCGGCTCAGGGCTACTCGACTGTTCAGTCTCAATTAGTGTCCAGTCCAGAAGAAAAGAAGTTTGAGGTCCTGGTGATCTGTGATGCAGAGGACCAAAGATCAGTCAACCCACGGGCATGTGCAGTAGGCATGGATGATGAAGTACAGCCTTTTGTAAAACAAAGATTATTTTTACCCGAGGGACGATGTTCTCATAGCATTGTACAGGTGAATGGAAGTGAAATCAGTTCCATTACTGTTCGTCAAATGAAGTTGGATACGAACAAGATAATTGAAGACCATAAAAAGAGGATGCTGCCAAGATTTAGGAATGACTTGCCTGGGAAAACTACCATAAGCGCCGAGCAAGAACTGCTAAGACTGTCCGAGGCTAATCCTGAAGGACTGGGTACTATGGATCCTGTTAAAGACTTTAACATCCGGGACCTAGATATGGTAACAACGATAGCGCGAAAACAGAGCCTCGAAGAACGAATGGCGAACTACGTTTGTTTAAACTGCCCCAAGTTTACAGAACACtttaaaTCCGTTGCGGACCAGATGAAGTTACGTGAGCACGTAAGCACTCTGAGATTTCTATTGTCAGACGAAAGTCTTCAACACAGAGAAGAATTGCAGCAAAGAATAGAGGTATAA

Transcript

ENSAVKT00000026440

CTCGGTCAAGATGGCGGCGAATGAAGAAGCTGAGGTACCAGGGTTAGAATGTTAGGGATTGTGGACAGAAAAACTCGCCATTAAAGGACGAAATATGGAAGAGAAAGGTACAAAACAGGAGTCTGATGCCCTGGAGTATGTTTTTGATCTTCTGGAAGTTGGCTGTACAGGGACAATTGAAGTTATTCCAGAATCAGTCAATAAATCCCCTAATGAAGAACTAAAACCACTAACTACTCTTCCTTGTGGTTTACCTCCTCTGTTTGCTCCAGATTTGAAGTCTGATTTAGAGCAATATCTTTTGGATCCCACCACCCTGCCCATCCACGACTTTCACAAGACACATAggttTTGGCCCCGTGAAAGAGACCCAGAGAGTATGTTGTTTTCAGATGTCTGTCCTGTTCCATCAACATTGAAAGTAGAGAGAAATCCAACAACTGGAGAGCTCCTGGGTTACAATGAGGTGATGTTAACAGATACTGGATGCACTGCTAAGAATTCCATGTCCCTGTTACGACAGCCTGGGCCACTATCTACCTCTGTGAGAGGAGAGTCAACAAATTATCCTTTTTTACCAGGTGGTATGGAAGCTCCTGAAAGTACAAAACCAGACCTTGTGTTTGATGGAGAGCTGAACTTTGAGAAAGATCTCCTTTCTGTGCCACCAGGATTTAAACAAGGAGCTTCTTTTAGTGATGCAAAAGAGGAACAAGGAGATTCCTCTGCCTCTGTGCCTCAAGTTTTGGCCATGTCTGACATCATGGCTGGTACAACACTTGAAGACTTGGAGTACAGTGATGATGGCGATGATCTGGATTCTGATGAAGATGACATTGATCAGttgCCTGAGAAAGGAGAATCTGTTATTGACCCAGAGGACAGCACAGAAGGAGGTCTCCAGAGGCAAGATAGCCTTGAAAATGTGTTGCTGGAGGGCCAAGATAAAGAGAACAAAGTAACTTCAGCAGCTCCCGTTACAGATAAACCAGTCAAAGAGGAGTGGGCTATAATGGTGGACGTGACAGAACCTGTGAAAGATTTTCACAAGCGAGTTCCTGATATGGCCCACAAGTGGAAGTTTGAGCTGGATACTTTTCAGAAGCAGGCCGTGCTTTGTTTAGAAAACAACGAGAGTGTTTTTGTTGCTGCTCACACATCTGCTGGAAAGACTGTCGTGGCCGAGTATGCCATCGCATTGGCCAACAAACACATGACGAGGACTGTGTATACGTCACCAATCAAGGCTTTGTCCAATCAGAAGTTTCGTGAGTTCAAGGATACTTTCGAAGATGTTGGTTTATTGACAGGTGACGTGCAGATCAGACCTGAGGCGTCCTGTCTTATCATGACCACGGAAATTTTACGTTCCATGTTATACAACGGTTCAGATGCCATACGAGATGTGGAATGGGTCATTTTTGACGAAGTTCACTACATTAATGACGACGAGAGAGGCGTTGTGTGGGAAGAAGTTTTGATTATGTTACCAGCTCAAGTCAAGATCATACTGTTATCAGCTACAGTACCTAACACTCTAGAATTTGCAGACTGGATAGGACGCACTAAGAAGAAAAAGATCTACGTCATCAGTACTCCGAAGCGTCCAGTCCCCCTCCAGCATTTCCTGTACACGGGCAACAGTAACAAGACAAGTAACGAGCTGTTTATGATCGTGGATGCTAACAGTAAATTCCTGACGCGCGGTTACGATGCAGCTGTGACGGCGAAGAAAGAGAGAGAAGGGAAAGGAAAGGATGCTTATGGCTCCAAGACTCACCAAAGTAAAAATATCAAGGAGGATCGTAACATCTGGTTGTCTTTGATTGAAATGCTTCGCAAGAAGGAGAAGCTTCCTGTGGTGGCTTTTACCTTTTCACGAAAGAGATGTGACGACAATGCAGATCAACTGAGTAACCTTGACCTAACCACCTCTACTGAGAAAAGTCTGATCCATGTCTTCATTCAGAAATCAGTGGCGAGACTCAAAGGCTCCGACAGACAGTTGCCACAAGTTTCTAGGATACAAGAGCTCCTAAAGCGTGGTCTTGGTGTGCACCACAGTGGAGTATTACCCATCATTAAAGAGATGGTGGAAATGCTGTTTGGACGAGGACTGGTGAAGATACTATTTGCCACTGAAACGTTTGCTATGGGAGTGAACATGCCAGCGAGGACTGTGGTGTTTGATTCAATCAGGAAACACGACGGTTCAAACTTCAGAGACCTCCTGACCGGGGAATACATTCAGATGGCTGGCCGTGCGGGGCGGAGAGGCCTGGATCCTACAGGAACCGTTATCATATTATGTAAAGGAAATATACCTCTTATGGCTGACCTCCATAAGATGATGCTGGGAAAACCGACTCAACTGGTCTCTAGATTCCGTCTCACCTATTCTATGATTTTAAACCTCTTACGAGTGGAAGAGCTGCGTGTAGAGGACATGATGAAAAGAAGTTTTGCCGAGTTCCACATGCAGAAAGACTCGCAGGAAAGAAAACGCGAAATGGAGGAAGTagagaaaaaattacaaaatataaAAGAGGTTGACTGTACGTTTTGTGTGGACGATTTAAAGTCATATTTCAAGGATTGTCGTGAGCTGTCGGAATTGACAAGAACTGTTCAGGCAGCCATCCTTTCGTCCTCCCATGGTCAGCGGGCTCTCTCTTCTGGGCGTGTCGTGACTATAAATACCGCTGAACATAAAAATGCTTTAGCTGTGATATTACGAACTGAAAACGTCTCGGCTCAGGGCTACTCGACTGTTCAGTCTCAATTAGTGTCCAGTCCAGAAGAAAAGAAGTTTGAGGTCCTGGTGATCTGTGATGCAGAGGACCAAAGATCAGTCAACCCACGGGCATGTGCAGTAGGCATGGATGATGAAGTACAGCCTTTTGTAAAACAAAGATTATTTTTACCCGAGGGACGATGTTCTCATAGCATTGTACAGGTGAATGGAAGTGAAATCAGTTCCATTACTGTTCGTCAAATGAAGTTGGATACGAACAAGATAATTGAAGACCATAAAAAGAGGATGCTGCCAAGATTTAGGAATGACTTGCCTGGGAAAACTACCATAAGCGCCGAGCAAGAACTGCTAAGACTGTCCGAGGCTAATCCTGAAGGACTGGGTACTATGGATCCTGTTAAAGACTTTAACATCCGGGACCTAGATATGGTAACAACGATAGCGCGAAAACAGAGCCTCGAAGAACGAATGGCGAACTACGTTTGTTTAAACTGCCCCAAGTTTACAGAACACtttaaaTCCGTTGCGGACCAGATGAAGTTACGTGAGCACGTAAGCACTCTGAGATTTCTATTGTCAGACGAAAGTCTTCAACACAGAGAAGAATTGCAGCAAAGAATAGAGGTATAAATGTTACGTTTATACGAAAGGGAAATTGACGATAACGGATTGCCAACCAAACATTTTAAGAAACATTTACATAACGTTTAGTTAGTGAGTTAACTTGCAACAATAAATCTGTTTTCAATGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q15477	Superkiller complex protein 2 OS=Homo sapiens OX=9606 GN=SKIC2 PE=1 SV=3
Q6NZR5	Superkiller complex protein 2 OS=Mus musculus OX=10090 GN=Skic2 PE=2 SV=1
O59801	Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=SPCC550.03c PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001225 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13234 all species →	MTR4_beta-barrel	Mtr4-like, beta-barrel domain	Domain	Interproscan
PF17911 all species →	Ski2_N	Ski2 N-terminal region	Domain	Interproscan
PF21408 all species →	MTR4-like_stalk	Exosome RNA helicase MTR4-like, stalk	Domain	Interproscan
PF00271 all species →	Helicase_C	Helicase conserved C-terminal domain	Domain	Interproscan
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR025696 all species →	Domain	Exosome RNA helicase MTR4-like, beta-barrel domain	Interproscan
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR040801 all species →	Domain	Ski2, N-terminal domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001650 all species →	Domain	Helicase, C-terminal domain-like	Interproscan
IPR048392 all species →	Domain	Exosome RNA helicase MTR4-like, stalk	Interproscan
IPR016438 all species →	Family	ATP-dependent RNA helicase SKI2-like	Interproscan
IPR050699 all species →	Family	RNA/DNA Helicase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12131 all species →	ATP-DEPENDENT RNA AND DNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0006401 all species →	Biological Process	RNA catabolic process	Interproscan
GO:0055087 all species →	Cellular Component	Ski complex	Interproscan
GO:0070478 all species →	Biological Process	nuclear-transcribed mRNA catabolic process, 3'-5' exonucleolytic nonsense-mediated decay	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000024468.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.