Gene detail

Detailed information of ENSAVKP00000024471.1 in Catalaphyllia jardinei

Genomic Location: :...
NR annotation: XP_020627001.1, uncharacterized protein LOC110064306 [Orbicella faveolata]

Gene Structure

More details in Jbrowse

Sequence

CDS

Transcript

ENSAVKT00000026443

TTTTTGCTGGCGCTCCCTGACGTTGCGAGATTGGAATTTTCTGTGAAGGATGGAGAGAATAAAGTGTTCGGAGTTGCTGCAGAGGGAGTTTATATGTCGGACCATGCGAAGAAAGCTGAGGGAATCCCAAATGGACTCAAACCTTTGCCGCCTTCCGAGTGGCCTAGAAACAAAGTGCGAAAAGTCGAAAAGTCTACCTTGAAAACTACAGCAGAGTCAGAGGAGAAAAAGAAAGTTTTGCCTAACTCCCGAGGGTTATATGGACTGCATATTAAGAATTTACCTCCTGTTTGCCAAGAGAGTGAAATAAGTCGTATCTTCAAGCAGTTTCGCAGTTTAAGAGaagtgaaaattgaaaattctaGCAGAATTGCATTTGTGAGGTTTTCCAGTTATGCAGATGCTGTGCGAGCTCTCAGGGATATGGATGGCTACAGTTTACGAGGTGCCATATTACAAATAAATCCTGCTACTGAACGCATGACCCAGCAAAATGCAAAAGGTGGCAAGGATAAAAAGGATGAGTCAAAAATGGGCAGAGTAAACAAGaacagaaataaaacaatgacCAATGGCATGGTGGATAAAGAGGCTGTTGTTACCAAACTCAAACCTGGAAGTGGTTTAGACAGTTCTTTACCATCACctaaagaaaggaaaacagCTTTCTCAGAGGAAAGCTGGGAAATAGATGGTAGATTGTCACCAAAAATTGAAGCCAATGAAACTGAGAAGTTTTCTAACCAAGACAATTTAGTTACTTGCATATATAAAGAAGAAGGCTTCTACCCCATACATGTTAGCAATTTTCCTGCAGGAACCACACAGGAAGCACTTAAACAGTTGTTCAGTACATGTGGAGAGATTGCACGGATAAATGTGCAAGAAAAGTTTGCCTTTGTCGATTTCACCAAACAAGAAGGAGCTGTGACTGccctacaaaaaatgaaaggtaCAAAGTTGGGTGATAAATTTCTCACAGTGACTCCCAGAACACCAAAAGGTAAAGTCAAGCAACAAGAGAATTCATCAGTGGGATCTTCCACTCTAAATCGTACATCTAGTCAGAGTTCTGTCTCCAGCAGTGATTCCTTAACACCACAGTCACCTAGAAGTCCCAATGTTTCTGCAACTTGTAGTTCAGGGATTAACAGTAATGGACACACACATGCAGAGTGTAACGACAGCGATGTAAGAGTTAATGGATACAGAGGAATCCCTGAGAGTTGCAGAGGACAAAGACAGACAGGAAGTTGTAGCAAAGTAGCAGAGACTTCAAATAGCATGCATGTGTATAAAGAAGGAGGAAAACTGGAAGAGACTAAAACTGCAAGTTGTTTTTCTAAATCTATTTTTGAGAAAGGCTGCAGCAGTTTTGATAGCAAGCCACAAATTTCTGTTAGTGTAAAACAAAGTGTACATGTGCATACTCTTTTAACATACCCAGAAATGTGTGAACTTTTAAAGAGTTGCCAGAAGCCTGTGAGGACTTTAGATAACATTGGAGCTCAAGAGTTTGACATTCTTGTGACTGACATTGTTGATGCTTGTCATTTCTGGGCCAACATTGATGATAAGATTGGAAGCTACAAGGAACTGGAACAAATTCGAAATGATCTTCAGATTGTAGAACATCATCCACGGTGTGTGCCAATTAAGAATAAACTTGGTGCGTCTTTATTTTCAGAGGACAAGAAGTGGTACAGgaaatttgattggtgttaatggtagctccaatctgatttgtgtgacatacatctctcactgattcCCCCGGCCCATAACATAGCTGATGCGCTGAccaagaggtatttttttttacaaaaaataactctaaaATGGAAAAATTGGCAGCATATTGAGAGATTCCACTCCCAAGCCACAAAGATTTGTACATTTCAAGAGTTACACATTTTATGAATGTGGTAAACAATAGAGGTCAGGCACTGGGGTTTGCAAGTGAAGCTTTGTTGGATCGCCCAAGGTTTTCCTGTGTTGTTGCTGCATTGTTTGCTTTACAATAGGCAATTTAAATCTTGCAAAAAGTTCAAGCAGCTGAACTTCTGGTTTTTAAAGCTCTCATGGGAGAAGACTTGAGATGAAAGTCTCGTCTCACGAGACAATTTTGTCTCATATGAGGGtagtaacttacttttgagtggtactgtacatacatgtaatttgcaAAATTTGGTGAAAGGTGGCCCAAGGCTCAGATTGATTGATGAAgaagaataaattattgttAAGGACACTATGTGTACCTGTAATGAATGTTTGTCATTATGCGCAATAATTATgttgatgcaagtgaagtatgatcctcgcagtaaattttccaatttaagcaattggaaagaagaagcctgaaaaaaatcagggcttcaacgggattcgaacccatgacctccgcgataccggtgcgatgctctaccaactgagctatgaagccacacattgggagcaaggtcaatttagtgagttcatatctcccgtaaggagtgaaatgatgtaaagtgtatatgaaataattcatatttgaactgcggttatagatgcaagtgaagtatgatcctcgcagtaaattttccaatttaagcaattggaaagaagaagcctgaaaaaaaatcagggcttcaacgggattcgaacccatg

Protein

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00076	RRM_1	RNA recognition motif	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000504	Domain	RNA recognition motif domain	Interproscan
IPR035979	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR050907	Family	Serine/Arginine-Rich Splicing Factor	Interproscan
IPR012677	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23147	SERINE/ARGININE RICH SPLICING FACTOR	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0003676	Molecular Function	nucleic acid binding	Interproscan
GO:0000398	Biological Process	mRNA splicing, via spliceosome	Interproscan
GO:0005730	Cellular Component	nucleolus	Interproscan
GO:0016607	Cellular Component	nuclear speck	Interproscan