Gene detail

Detailed information of ENSAVKP00000024563.1 in Catalaphyllia jardinei

Genomic Location: chr3:25897796...25935166
NR annotation: PFX29764.1, Myomegalin [Stylophora pistillata]
Species Catalaphyllia jardinei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

ENSAVKT00000026536

ATGGATTCAGTAGCCGAAGACGATATAACTCTTCCTTTGGATTTTGATAGGAGCACTAATCTGGCAAGGTTTAAGGAGGCCGTCGCAGCTGGTACGGGGGGCGACATGTTAGATTCCTCCGCTGAATTTTCCGAAGGACTGACAGTAAGACCTACAATTACAGGTGCTGGTGGTCAAGATGGTTCTGGGTCACcccaaacaaaaacaatgaaagaTTATGAATATCAAATATCTGAGCTAAAAAAGGAGAATTTTGGTTTGAAGCTGAGAATTTACTTCCTTGAAGAACGAGTGAACCAAAACGGCGATGTTCCAGAGGATATTTTCAAGGCAaacATAGAACTCAAAGTGACAGtggaaaaactaaagaaagagcTTGTTGAAAGGCAGGAATTATTGGTCAAGGCCTCGAATGCTGTTGAAGCCCTGGCCCAACACCGTGACACACAGATTAGACAGCTAACAGAGGAGCATAATGAAGAGTTAAGGGAAATCAGAGAGGGATATGAAATCAAGCTCAAAGAAATGGAGAAGGACTTGGCTGTTCTAAGGAACGATATGGAAGACATGGCTGACAAACTTGCTGAGACTGCTCAGCTTAATCAACAATTAAATGAGAGGCTATTGGAAAGTACTGATGGCTTCCATGATGATCAGCAACAGATGTTTAAGTTTACTTTGAATTCCAGGATGATAGATGACTTGAGAGGGTCTCTGGCTTCTACACAGGAGGAAAACaaggagttgaaagatAACCTGGACAGCTTGAAGGATGTACTGAGCCAACAAGAACAAGGCATTCCCCAGAATGCAGCATTGGAAATTAATGAAAGAAAGATACGAGAATGTGAAGGAAGAATCAGACAACTTACAGAAGAACttgaaaacagaaacaagaaatTAGAGgAATTAAGGGATAAAGCCAAAAAGGCTGAAAGAACAAACAGGGAATTGCGAAATCAGCTTCACGATAAAGAGCGAGAACAACATTTAAACTCCAGAAACTCAACAGATAGTTCACTATCACAGAGCACAAAGGATGGTTCCAGAGACAGTGagCTGCAACAGCTTCACACCAAAGTTCAAGACTTGAATCAAAGTTTAACGGCCACAAGAGAGGCAGCACACACTGCAAAGAGGAAATGGTATCAGGCTTTTGAAGAACACTCTGAAGTTATTAAAGCAAGAGATGCAATGATAGCTGCTTTGCAAAGTTCCTTAAGTGCCAAGGACATGGAGTTGGAGAAACTTATACAATCGATGTCAGCCAAGGAAGTTACATTACAGAGATTGAACAATGGTAAACTGCTGCTGGAGCAACGCTTGGATGAGGTGTTGAAACAAAAAGAGCGTGAGCAAGCTCAAGTGTCAGCGGGAGCTCAAGAGCAACTGGAGACCAAAGACAGACTTATCCAGAAGTTAGCGgcgaataataaagaaaaggaCAACTTAATTGCGTTTAACATGATTGAGAAAATTACTTCGTATCATTTGCCACCACAGGACTTTTTAGATGCCTTAAAGGGGAGTGACATGGATGATGACCCAGGAAGCCCGTCCGATGATCAGGACAACCTTTTGAAAAAACTAACAAACTACATGAAGGAAAAGGATCGCGCGCTTCAGGTTGGTTACTTCAACAAAGCGACTTTTTACCTTCATAAAGTAGTAGTTGAGGTGTTCCAAATGTCAGTGCATCTTTCGTCGGAACAACTCTCAAAGCactcaaaatgtcaaaattttttCCGTCTATTTTTTTCATATACGCGTGTGTTCCGATGCAGCACGGCAGTTTTTTCTCTGATCTATTTGATTGCTTTGTCTAGATACGTTATTTTcatgtgttgttgttgttttttcataGAGTCTTTAAAGAAGCTTGAGTCAGATTACAGAAACAACTTGAGCAAGTTACAAGGCGACGACCGAGAGGTAAACGTTTCATCTCTGGTCGAGGCTCAGAAAGGAAAAGAGCAAGCACTTGTCGACTCGGCTGCGCTCAAGAAATCTAACTTAGAACTCGAAGCGGACCTGAAGGTGAAGCTGAACAACATTGAAATGCTTAATGAGGCTGCGCAGATGAAAGACAAAATCATTAAGGAGATGCAAGAAGATCAACAGAAGCAACTGAAAGACATGAAAGAAAACATTGGGTATTATCAGAAGAAAGCTCAGGAACTAGAGGCGTCGAATAATTTACTTCGGCAACAACTGATGGACACTGAAGATCTTAAGAATTCTCTTGAGCAACAAGTCGAAACCTACAAGAGAAGGTTGAATAATCAGGCCTCTTACGGGGAAGAGGAAGTCAATCTTCTCCGTGAAGAAGTGAACAATCTAAAAGCCAGGCTACAAAGGGCTGGGACATCACGCCGGGAGAGTCCTGGAGTGGGAGCTGGGGCTGAAGAACAGAGAGCCGATGTGCTTCAGCTGCAACAGTTGTTAGAAGCTCAGATCGGAGAGACAAAGCGACTTAACGACATCCTGGATACTGAGCATGCGTTGTACAGTAACTTGGTGCATGTGGCCCAGAATGCACAGCAAGGAGAAGCCAGCCACGAAGCAAACATCAAAGACGAGATGCAGGCGCTGAAATCTCTCCGCGCACAACTTGAGGAAGGAATCCGCTTAAACGACTCACTTCGGACTCAACTCCACGACAAACTAGCTTCCAGTACAACGGCGAGCCCGCATCCGGCCTCTCCTTATGACGTTGCTTATCAGAGGGAAATTCAAGAACTCAAATCGAGGCTTGAAGATAGTGAACGCTGGAATGCTTCATTGCAGTCTCGGCTGAATGAGTTACAGCCGCGGGTCAGTGGTGTTGGTGGTTCGAGTGGTCGAGACAGCGGAGACGGAGTGTCGAGTTCACCTTCAAGGGTTCATAGGCTGGAGCAGCAAGTAGAAAAGTTAAAGGAACAGTTGAAACAGAGCAGTCAGTTGAATATCAGGCTCAAGAACCAACTGGATGAAGTGAACGCTTTAAATATGCAGACACTAGCGGAAAAGGATGACAAGATAAGAGACTTGATTCGGCAACTAGAGGATCTACAAACACAGTTGGACAACACAAAGAGAACATTCATCGAGCTCGAAAAAAGACTTACAGACGCCAACACAAAACTAGAATTCTATGCTTCAAGTTTAAATGGCAACCATGATGAGACACTGCTTGAGCGAGAACAGGAACTGGAGATTTTAAAACAAGAGCTTGATGAATTGCGTCGGCTTCAAGCACGTGATGAGCGTATCGGCTCGGATATGGCCGCGCAGACCTCACCTTCAAGGGACTGGGCTCGTGCGTCGAGTGATAAAGTGAAGGACTTGGAGCGGAGATTTGAAGAGAGTCTTCAAACGACTGAACAGTACAAGAACATCTTGGACGAGAAAGAGATGGAACTGTTCAAGCTCAGGGAGTCAGCAAGGGCTAAGGAGAATTCTGAAGCAAAATCAAGAGAAACTGCGGAGATCCAGAGACTTCGTGATGAGTATGAATCAGGTATCAAAACAAACAACGAACTcaaaagacttttggaaagCGAACGAGCAAAAGGCCACGAAAAATCAAGGACACCTGATGGAGTCTTGGAATTACGACGACAACTGAACGAAAGTGCCCGATCGGACGACGAAGTGATCCGACTTAGACACGAACTTCAAAATGCCACTCAAATAAATGATTCACTAGGATCGCGAATTAGAGACTTGAACGAAACTGTGTCCAAGATGAAGGGAGTAAGAACCGACGCAGTCAAGCTACAAAAAGAGCTGAAAGACGCCCAGCGTTTGAATAAAACACTCACTGATCAGCTCAAGGAGACAAGAAAATCAGCTGAGGAAATTGGGCGAGTACAGCGCGAGTTACGAGAAGCGAAAATGATGAATGAGCAACTCGGCAAACAACTTGCTGAACTTCTTAATCACTCGGCGATAATGAAGAGTCAAATTGAAAAATTTCAGCATGAACTCCAAGAAAAAGACAAGGTGATCGAGACGTTACAGCTTAGACTACAGTCCAAAGCAGACATGCACTCAGTAGCATTATCTCCGTCTTCTTCTCCGTCCAAACGCGTTGTAGAAACACAGACTAGTCCACGCCAGGTAAGTGCTTCTTCCTCTGAAGCTACGGAGAAGCTTCAGCAGATAAACAGGATGCTACTGGGCGAGAATCAGCTGTTGAGGAGTAAACTGAAGGACAGCGAAAAACTAAACGACACTCTGAGAAACGAGAACCACATGTACTCAAAAATACAAAGCCAGTCTTCTCGGACACCAGTGACAAGCCAAAAGCGGTCTACAATGGACGAGCTATTGGCCGGCTTCATGACTGAAATGCGAGACTTGCGCCTGCGTTTAGAAGATAGTATTCGCACTAATGATGCATTGCGGGCGCAGCTAGAGATGCGGTTGTCGGAGAACCGTGGTGATAAGAGTGCTGGCAGTGTTCCTGATAAGATCATTCTGATTCGTGAGAATGACACTCTGAGGACTGAACTCCTGGAGAAAGATCGAGCCAACGAGAAACTGAAGAGAATCATCGGTGGAATGAAACAAGAGCAAACCAGGGACAAAGAACAAATCAACCTTGTCCGCCAACAACTGCTAGAGAGCACCAAAGTATCGGAAAACCTTAGAAAAGAGCTGAGTGTATACGAAAAGCTCTATAAATTGTCTCTTGAGGGCAGGAACATGGAAGTACAGACAGAGGGTCAAAGTTACGGCAGTGAGGGACCTCGAAGTCCTAACAGCGAACTGCAGCACGACGCCATGTCCATGTTATTGGCTGAAATCCGTAGCTTACGAGTCCAGCTCGAGAAAAACATTCAAACCAACAATGCATTGCGGCTTAAACTCGAGGAGCAACTCAGTCGCCCACTTAGTTCATCTTCCCAGTCCCCAAGCAGATCTCAAGTCACGGTCATCCGGCAGCTCGACTTCTCAGAGGGGAAGTGTGGGGATGATGTTAGTTCCGTCAGAGaTCTAAAAAATGGTAGAATACCGTCCGAAGGTCAGCAGATCGTGAATCAGCTTGAAGAGAAATTAAACTCGATCAACAAATTCGCGACTGAAGCCTACAATAGTATTATATCTAACACTCAGACCGATAGCCTACCTGatattgaaaatattttgagaaTTAGTTTGGAGTGTAAAGCGCTGCTGAACGCGCTTCATGTCGACTCTTCACCTCGGCAAACACAAAAGGATTCTGAAGATGCCAGTGGAGAGAATGAAAGTCTTAAACTTGAAATTGGGAAATTAAGACGTCGTCTTCTTATCCAAGAAGATATCATTAAACGAGCTTGCGAAAGGCTTGAGGTAGGTTGCTCTCTAGGTGTCTCTCTTTGTACAATGGCAGACACTTTACATTAA

Transcript

ENSAVKT00000026536

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q19UN5	CDK5 regulatory subunit-associated protein 2 OS=Pan troglodytes OX=9598 GN=CDK5RAP2 PE=2 SV=1
Q96SN8	CDK5 regulatory subunit-associated protein 2 OS=Homo sapiens OX=9606 GN=CDK5RAP2 PE=1 SV=5
Q9BE52	CDK5 regulatory subunit-associated protein 2 OS=Macaca fascicularis OX=9541 GN=CDK5RAP2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001960 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07989 all species →	Cnn_1N	Centrosomin N-terminal motif 1	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042791 all species →	Family	CDK5 regulatory subunit-associated protein 2	Interproscan
IPR012943 all species →	Domain	Centrosomin, N-terminal motif 1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46930 all species →	CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000132 all species →	Biological Process	establishment of mitotic spindle orientation	Interproscan
GO:0000226 all species →	Biological Process	microtubule cytoskeleton organization	Interproscan
GO:0000242 all species →	Cellular Component	pericentriolar material	Interproscan
GO:0000976 all species →	Molecular Function	transcription cis-regulatory region binding	Interproscan
GO:0001578 all species →	Biological Process	microtubule bundle formation	Interproscan
GO:0005516 all species →	Molecular Function	calmodulin binding	Interproscan
GO:0007059 all species →	Biological Process	chromosome segregation	Interproscan
GO:0007099 all species →	Biological Process	centriole replication	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0031116 all species →	Biological Process	positive regulation of microtubule polymerization	Interproscan
GO:0035371 all species →	Cellular Component	microtubule plus-end	Interproscan
GO:0043015 all species →	Molecular Function	gamma-tubulin binding	Interproscan
GO:0045893 all species →	Biological Process	positive regulation of DNA-templated transcription	Interproscan
GO:0046600 all species →	Biological Process	negative regulation of centriole replication	Interproscan
GO:0048471 all species →	Cellular Component	perinuclear region of cytoplasm	Interproscan
GO:0090266 all species →	Biological Process	regulation of mitotic cell cycle spindle assembly checkpoint	Interproscan
GO:0097431 all species →	Cellular Component	mitotic spindle pole	Interproscan
GO:0005815 all species →	Cellular Component	microtubule organizing center	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000024563.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →