Gene detail

Detailed information of ENSAVKP00000026366.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: RMX45261.1, hypothetical protein pdam_00000757 [Pocillopora damicornis]
Species abbreviation CJARD · all data for this species · gene families

Sequence

CDS

ENSAVKT00000028393

TTCAAACTTCTCTGTCAGTGGCGTgaacagctgtcaatcacatgTCAGGAGGCGTGGCTGGAATTTCTAGCGCTGTTCTCTGAAGGCTGTTTCAGATATCGCAGGGCTGTACATCATATTGCTACACTCGACTGTTTGTTTTCCTTGGCTGCTGTAGCCAAGCAAGCGGGTTTCACTAGGCCCGTTGTGAAGGACTGCGAAGCGCACATTTACATCAAACAAGGATGGCATCCGGTTTTGCACTCCTGTCTGCCAGAGAATAAACAATATGTACCAAATGATACGCACATGAATGTGAACAGCAATCGCTGTATGATTATCACTGGACCTAATATGGGAGGAAAGAGTTCTTACATCAAACAGGTTGCATTGATTGCTATTCTGGCCCAGGTCGGCTCGTTTGTGCCAGCAGAGGAAGTACAGGTTGGAGTCCTGGATGCGGTTTTCACCAGAATGGGGGCTACAGACAACATCTATAAAGGGCAAAGTACGTTTATGGTCGAACTACAGGAAACTTCTGATATAATTGCCCAGGCCACACCGAAGTCACTTGTCATTCTGGACGAGCTGGGCCGTGGTACTAGTACCCATGACGGCACGGCCATTGCGTATGCTACACTACACCACTTCGTTAGTCAGGTTTCCAGCCTGACTCTCTTTGTAACACATTATCCGTCACTAGCTGAGCTTGACGCCATCTTCCCGAACCAAGTCACTAACAACCACATGGCGTTTATGACGTCAGAAGAGGTACAAGATCAACAGAGCACAAGAGAGGATATTGAGGGAGGGGAGACTGAGAAGCAGCACTTACCGTCTACTGTACCCTCAGTCACGTTTTTGTATAACTTAGTGAATGGAGCTGCGGCAAGAAGCTACGGTTTAAATGTGGCTCGCTTAGCAGGCATTCCAGATGAAATACTGAAAAAGGCTGCTGCGAAATCGCGAGAACTGGAGAATTTAATCACAACAAGACGcTCCACCAAGACTAATTTCCAGGACTTGTTTTCAAACACACCGGTCACACTCGACACGATCAAACACCTGCGGATGGAACTGGAAAAGATTGCATCTGAATGTTTCTGTGGTTTTCGTTGCAAAATGCCGTCACTTTTCGCTTTTTTTGCGCTTCTTGGCTTATCTGCCTGTCTTGCTTCCAACAACGTGTACCATCTAAACGAACGAGATTTTGAGAGTCACATCCGGGACAAGGACATTATGCTTGTAGATTTCTTCGCGCCATGgTGCCCGCATTGCCAGAAACTAAGTCCTGAGTTGGACGCAGCTGCAGACCAACTCGCTACAAAGAACCAGTTTGTATTTGCTAAGGTGGATTGTGTTAATGACGGCAAACAGTTGTGTGAGCGATTTAACATACAAGGTTTTCCTACCATCAAGCTGTTCAAATATggtcaatatgttggtgattaTGTTGGACAACGGGACAGAGGCTCACTGATGCAATACGTCGATTCAGTTGCGTCCTCTTTCAGACAGAATGAACCGCTGACAAGTGGAGCGTCAACGCCCTTATCGCTGGCTCAGGCAATTAACTACAGACCTCACGCCCAAGTGTTCTCCTCGCACCATGCCTCCGCTGCTCATGCTCCCGCCCCGGTCGTTGCACCGACATTTGTGAATCATGCGAACTTGCACCAGAAGAACCCGTCTCTCACGCAGTCCTTTTATGGTTCCTCCACGCATGCGCAACAGCCTGGAAATACCGCTGCATTTCTTGGCTCAAATCCTCGGCTGCAGCAAGCGAGCCCAGACTCCTTGCAGTCCAAATTTGGCAACTTGGCTTCATTGGACGTGTACAGGGCCAAGCTGAAAATGATAGCAGCGTATAAGAATTATCAGCGCCGCCTCAAAGAGTACAGAACCAAACTCACGGCAGCCAGTAAAACAAACGTGAATCCCAGTCCCCAAGGGTATGCAGGTGCGGTTACTCGACCGCCTCGTCCTGGTGTCAACGCATTTGCTCAGCCTCAGCCCTATCGCGGATATTATAGACCCGAGGCTTTAGCAGCTCAGAATGTACAGATTAACCGTGCGTATCCCCAGGCCGGATTCGGAGCAAACCAAGCCTTGGCGAAACCAGCTCTACCCACGCCTGGGCAGTCGAACGACTCACCAACAAAGCCAGACACTTCAGCTTTGAAGGATCTCAAGGCAGACATCGAGTCCGCCATTCAAGATGCATTGCGAAACGTCGTGTCAAAAGAAAGCGAGAAGACTAAGGCGAGTCCAACAGTTCATGTTGATGGCGAGAGGGCTAAGTCCCATTCTTCCGAACAAACAGGTTCCGGTTCTGGCGCCCAGTCACAGAGCGATACAGCGCATGGCTCGGGCATCGTTGGAGAAGCTGTGACTGGGGAAGTCGCGGGGAGTGGGTCAGGAGTAAAACCTGATACTCGGTCAAGAATAGACACGATTTAA

Transcript

ENSAVKT00000028393

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P20585	DNA mismatch repair protein Msh3 OS=Homo sapiens OX=9606 GN=MSH3 PE=1 SV=4
P13705	DNA mismatch repair protein Msh3 OS=Mus musculus OX=10090 GN=Msh3 PE=2 SV=3
A1DCB2	DNA mismatch repair protein msh3 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / CBS 544.65 / FGSC A1164 / JCM 1740 / NRRL 181 / WB 181) OX=331117 GN=msh3 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00488 all species →	MutS_V	MutS domain V	Domain	Interproscan
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000432 all species →	Domain	DNA mismatch repair protein MutS, C-terminal	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR036187 all species →	Homologous_superfamily	DNA mismatch repair protein MutS, core domain superfamily	Interproscan
IPR045076 all species →	Family	DNA mismatch repair MutS family	Interproscan
IPR017937 all species →	Conserved_site	Thioredoxin, conserved site	Interproscan
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11361 all species →	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006298 all species →	Biological Process	mismatch repair	Interproscan
GO:0030983 all species →	Molecular Function	mismatched DNA binding	Interproscan
GO:0003690 all species →	Molecular Function	double-stranded DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006312 all species →	Biological Process	mitotic recombination	Interproscan
GO:0140664 all species →	Molecular Function	ATP-dependent DNA damage sensor activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000026366.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.