Gene detail

Detailed information of ENSAVKP00000027489.1 in Catalaphyllia jardinei

Genomic Location: not available for this species
NR annotation: XP_020610819.1, DEAD-box ATP-dependent RNA helicase 47, mitochondrial-like [Orbicella faveolata]
Species Catalaphyllia jardinei · all data for this species · gene families

Sequence

CDS

Transcript

ENSAVKT00000029682

TAGGAAATTACACATGTGTGCACGCCAATTTTCGGATGAATCTTTTTCGCCATTTCAGTGAAAGTAATCGCTTTACATTCCTTGATGCAATCTGTCATTTTAAAAAGATTCGGTATCCAGCAGCTCTTACGGAATAATTTACATCTAAGACATGTGAACCACGTGCGCTATTTTGCCTCGAATAGCTCAAAGCAACCCAAAGAGGACGAACCTGACAATGGTGTGTCAGATGTGGAAAGGACACATAAGcttagaaagaaaacaaagaaacatggcCCAGCTAATGATTTTATGCAATTGTGGAGTACTTCAGAAGGCTACATACAAACTATATACAACGAAGCAAAGACAGGAACGAAAAAACCCATTCGAAATACATTTTGGACTCAAAATGTAAGCACATTACCCCTAGCCAGTGAACTAACAGAGGAAGAAAGAGAGGAGCTTCTTGAAGATGACTGGTCAGTGGATTTCAGAATCCCTGAAGCGGGGGATTTTGCAACTTTAACCCCAGTGTACAAGTCATTGACAGAAGAGGAAAGCGAAGAAAATCTGGAAAGAAAGGGTAATGAACTGGAGAGGGAAGACGACAAGTATGCGAAGAAAGAATCTAATGTTGTTGACACCTCAAAAATCATATCCTTTCAAGACTTTGATCTTCATCCAAAACTTGTTGAGAAACTAAACAGAGATGGTATTACCACTCCAACAGCTATCCAAAAACAAGCAATTCCGTTGATCTTTAAAAGGAAAAGTGTCTTAATTCAATCAGAGACAGGATCTGGTAAAACATTGGTGTTTTTGCTGCCTGCTCTTCAGTTTCCTGGAAAAACATTTGCTACAGTTATTATTGTACCCACTAGAGAGTTGGCAAGTCAATTGCTGTTTGAGGCACGTCGTCTTCTTGGAGACAAAACTATTGTGGAGTCTTTTgtgAGTGGTATTGATCTGAGTAAACAGGAAGCAAGATTGaaagacaacaaaagaaaacCTTTGATAGTTATTGGGACTGCAAAGAAGATCCTTGAAATCGTTGACAAGGATCCCTCCCTTGCGCGGCACACTAAAACTATTGTGATTGATGAAGTAGACAAAGTTCTTTTGCCGCTTCATAGAAAGACCCCGTTTAAGAAGCTAACCCATCGAGAGAACCATCCCAGACCAGCAAAACTGTTAGTGGAGAAGATCCTCAAGATCTCTAAAaaTTTTCAGGGATTCAGGCCAGAAGTCAGCCCTGGTGTTTATTCATCGTCTCCAATCAGTTGACAGTTTTGTCTGGGAGTTGAGAGAGCTAGGCATAAATGCTGTTGCTCTCTACAAACAAGTTGCTAATCAAGATCATGAAGAGTATAACAAATTCCTTTCTGACTTTCGGACTGGGCAAATAAATGTTGTGGTCGGCACAGAGGAAACTGTCAGGGGTCTGGATTTTAAAGAGTTGGACCATGTTTATTTGACAGAAGTCGCAAAGAATATTGATGAGTATTTACATCTTGCTGGTAGGGTAGGACGGCAGGGAAGGCCTGGCACTGCTACGACATTGGTATCCACAAAAGACCCGAGAGAAGAGATAAGGATGAAACTGGAATATCGCAGGCTTGGGTTACCTTTTGAACAGATCATTTTGTGAAATGAACTTATAGATAAGTTTTGTTCAAACAATTAGCCAGTGTGTTAACAGGCATCTGATTTCAGAAATGAAAGAGTTTAGGTCATGCCTGAAATATTTGAACTGATCTAAATCTAAAGAGATCACTCTTTTGTCCATTAAATGGTTCCTCTGTTTTTGTAACAATAGCATAGTGGATACCTTTTATCAGACCGCGTGTGGTATATATTTGGGTAGGTCATAAATTTTTGCCCTCTCTCACTCTCGTACAGGAAGTTATGGACATGGGAATACAGTTGAACTGCTCTAATGGACCAGTTTCCTTTGGGCAGGCACCGCCAATATCTCAAGCGATACACGCACACAGCATATTTTAACTTCACATAAGAGAAATTTTACAGCCACTAGGTCAAGTTGTAAGTGTGTTCACTTTCAGGTTTGTCAGAAATTCAGTGTACTGTATTCTTGATAACTGAAGTCATGCACAAGTGTCTGCTTACAgccacaaaaacaaaaataatgaaattaaataaaataatacattAGTTGACCAGACAGGACAATTTGAATTTAGAATCCAGAAGCAAATCTGGCCATGTTGCCCAGGGTTGACTCTTCCCCTTTATGCTCTGGGTTTTTTTCCAAATGCTCTGGGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q10PV9	DEAD-box ATP-dependent RNA helicase 47B OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0219700 PE=2 SV=1
Q8SR49	ATP-dependent rRNA helicase SPB4 OS=Encephalitozoon cuniculi (strain GB-M1) OX=284813 GN=SPB4 PE=3 SV=1
Q0DBU5	DEAD-box ATP-dependent RNA helicase 31 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0526600 PE=3 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008567 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00270 all species →	DEAD	DEAD/DEAH box helicase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR014001 all species →	Domain	Helicase superfamily 1/2, ATP-binding domain	Interproscan
IPR014014 all species →	Domain	RNA helicase, DEAD-box type, Q motif	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR011545 all species →	Domain	DEAD/DEAH box helicase domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24031 all species →	RNA HELICASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0003724 all species →	Molecular Function	RNA helicase activity	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for ENSAVKP00000027489.1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.