Gene detail

Detailed information of ENSAVKP00000034881.1 in Catalaphyllia jardinei

Genomic Location: :...
NR annotation: CAH3130635.1, unnamed protein product [Pocillopora meandrina]

Gene Structure

More details in Jbrowse

Sequence

CDS

ENSAVKT00000037685

ATGTGGAATCATCTTACTTTAGCGACAAACTTGAGTAGATGTGTTGTCAAACACACTCTAACTAGTTCAAGGCATGGTGTTTTGCCATTCTCcaatctgttcctcaaagcgtTTTCAACAAGTTTGGTGTCTGAAGGAAGGACGCATTACTCTTTCATAAGGGTGCGACGCAGCATGCCAAACATTCCCATCCCAGGTTACCTTAAGGATGGTTCTGTGAAACGCAACCAAATGAAAGCAGGTAGAGACCCTGTGACTGGAAGGATTGCCATTCGACACAAGGGCGGTGGCCATTCACAGACCTACCGCATAATAGATTTTGTGAGAGTACCTGCGCTTCAAGAAAATGAAGAGCCTAAAAAGATCAGGGATAAAGTCCTCCACATCGGTTATGATCCTTGTCGCTCAGGGCGAATAGCTCTGGTTGCTGGAGATGGAAgcaacaaaatgaaaatcatCACAGCCCCACATGAAATGAAGGTTGGAGATGTAGTCACGGCATTCAGAGGAAAGCCGGAGTCAATTGCGAGGTTGAAGCCTGGTGATGCCTACCCCTTGGCGCATCTTCCCATTGGTACTTTGGTGTACAATGTTGAACTGCAGCCGGGGCAAGGTGCACAGCTGGTGCGAGCGGCAGGTACATGTGCACAGATTCTAAACAAGACTGAAACTACAGCCAGGCTGCGACTGCCTTCCAAGGCAGAGAAAGACGTACCACTAGATTGTTTGGCTTCATTAGGGAGGGTTTCTAATATTGATCATAAAAATAGAGTTATTGGTAAAGCAGGGAGAAATCGTTGGCTCAATAGGAGACCAAAGGGTCAAACTGGTACAAATCGCTCTTTGTGGAAGAAGAAACGATATGGCGACTTCCTCATTACTATGCTACGTCGAGGAGTGATGGCAACTTTAGAAACGTTGAAATTTGACAACTTAGCTCTTCGTTCTCTTCCAATCGACAAGGAAACCCAAAATGTAATTAGACAGGTGGAAGGTGCATGCTTCACTCTTGTTGATCCGACACCGGTTAAAAATCCTACCTTGGTAAGCTACTCAGCTGATGCCTTGTCGCTCCTGGATTTGCCGCAGTCGGAAGTGACTAGACCAGAGTTTGTGCAGCACATGAGTGGAAACAAACTGCTCGGAGGAAGCCAGACAGCAGCTCATTGTTATTGCGGTCATCAACAGGGGTATTTTTCCGGTCAGCTTGGAGATGGCGCTGCGATGTACCTTGGGGAAGTGTTAAATTCCAAAGGTGATCGGTGGGAAATCCAGTTAAAAGGAGCAGGTCTGACTCCCTTCTCCAACCACAGGGATGGACGGAAAGTCTTGAGGTCCTCCATTCGAGAATTCTTGTGCAGTGAGGCCATGTATCATCTGGGAGTACCAACCACTAGAGctGGCTGTTGTGTGACCTCAGATACTTTTGTTGACAGAAATAAAGATTACAATGGGTTTGCTGCAAAGGAAAGAGCCTCTTTAGTATTAAGAATTGCTCCAACATTCCTAAGATTTGGTTCTTTTGAGATTTTTAAACCTGCTGACCCCTTGACTGGTTATAAGGGCCCAAGTTCTGGCCGAGATGACATTCTTCATCAGCTGCTTGGCTACACAATCAAAAACTTCTATCCTCAAATCTTCAGCAGAGACTATCAGAGTCTTGAAGAATGCTATCTTGCTTTTTATAAGGAGTTGACAATATTGACTGCTCGCCTCGTGGCTGACTGGCAGTGTGTTGGTTTCTGCCATGGGGTCCTCAATTCAGACAACATGAGTATCGTTGGTGTCACTATTGACTATGGACCTTATGGATTTTTGGATTATTATGATCCAGATTACTTAAGTCAATCATCTGATGCCCGAAGAAGGAACTCCTTTAAAAACCAACCTGAGCTCTGTAAATGGAATTTGCTCAAACTAGCAGAGGCCATACAAGATGCATTGCCTCTTCACAAGTCTAAAGCTGCTCTAGAAGACTTGTTTGATACTGAGTTCCAAAAGTGCTTCATGGCCAAGATGAGGTCGAAATATTTCAAACTCTCTTGTGTTCATTACCTTGACAGGAATCTCATCTCGAATCTCCTTGACACAATGAAGAAAACTGGAGCTGATTTTACTAACACATTCAGATGTCTTAGCAGAGTAACACCTACAGAGTGTTCATCAGTTGAAAGTGATGAAGACGTTATTGAATACTTGGTGTCCCAGTGCATTTCACTTCAAGGAATGATCTCAGCATGTTCAGCAGCTGTAGGGTGGAGTCAAATGATGGAAATGAGTCGAGATGTGTGGAAATCAAGTCCAAATGTGATCGCCCATATCGAGATGGAAAGAGCGATACAGGCAGCAGAAAATGGAGACTTCTCTATGGTGCATAGTATTCTAAAACGTTTGGAAACACCATACAGTGACGATGTGGAAGATGAAGAAGCCAGTTTCCCTCAAGCAGCAACTGCGGAACCTTCGCCATCCTTAGCAGATCACAGGGAAAGAACTCCTTTTAACGTCTGCGACAAACACGAAACTTTTCGCGATAAACCGCCAGAGGACGTGCTCAATATGCGACTTTCATGA

Transcript

ENSAVKT00000037685

Protein

Uniprot

Uniprot term	Description
Q9DBC0	Protein adenylyltransferase SelO, mitochondrial OS=Mus musculus OX=10090 GN=Selenoo PE=1 SV=4
Q9BVL4	Protein adenylyltransferase SelO, mitochondrial OS=Homo sapiens OX=9606 GN=SELENOO PE=1 SV=3
Q1LVN8	Protein adenylyltransferase SelO-1, mitochondrial OS=Danio rerio OX=7955 GN=selenoo1 PE=3 SV=2

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00181	Ribosomal_L2	Ribosomal Proteins L2, RNA binding domain	Domain	Interproscan
PF03947	Ribosomal_L2_C	Ribosomal Proteins L2, C-terminal domain	Domain	Interproscan
PF02696	SelO	Protein adenylyltransferase SelO	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002171	Family	Large ribosomal subunit protein uL2	Interproscan
IPR008991	Homologous_superfamily	Translation protein SH3-like domain superfamily	Interproscan
IPR003846	Family	Protein adenylyltransferase SelO	Interproscan
IPR022666	Domain	Large ribosomal subunit protein uL2, RNA-binding domain	Interproscan
IPR022669	Domain	Large ribosomal subunit protein uL2, C-terminal	Interproscan
IPR012340	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR005880	Family	Large ribosomal subunit protein uL2, bacterial/organellar-type	Interproscan
IPR014722	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12153	SELENOPROTEIN O	Interproscan

Gene Ontology

GO terms	Category	Description	Source
GO:0003735	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840	Cellular Component	ribosome	Interproscan
GO:0006412	Biological Process	translation	Interproscan
GO:0003723	Molecular Function	RNA binding	Interproscan
GO:0015934	Cellular Component	large ribosomal subunit	Interproscan
GO:0016740	Molecular Function	transferase activity	Interproscan

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID	Source
K08997	SELENOO, selO; protein adenylyltransferase	EC:2.7.7.108	Enzymes with EC numbers	-	deepkoala