Gene detail

Detailed information of ENSAVKP00000037548.1 in Catalaphyllia jardinei

Genomic Location: chr7:25587068...25603116
NR annotation: KAJ7382790.1, hypothetical protein OS493_032749 [Desmophyllum pertusum]
Species Catalaphyllia jardinei · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

ENSAVKT00000040532

TCCTCTCCCTGACTTCTCGGCTGACAAACATCACCACTCCCACAATGTCACATATTAAACCTGGAGAACACAAGAGAATGGGTGCCCTTGATGTGTGTCCCTTTATTCCTGTTCAAGGTGTAACTATGGAAGACTGTGTTCAGTGTGCAAAAATATTTGGGGAGAGAGCAGCTATGGAGCTTGGAATACCAGTCTACCTGTATGGCTATGCATCTGATAATGAATACCGAAAAACTGTCCCACAGATCAGGGCAGGAGAGTATGAAGGTCTTGCTGAAAAGATCCAAAAGTCGGAATGGAAGCCAGACTATGGTCCAGCAGAATTCCTTCCGACATGGGGAGCCACTATAGCTGGGGCAAGGAAGTTCTTGATTGCTTACAATATCAACATTCTGGGAACAAAGGAACAAGCTCATCGACTAGCATTGAATATAAGAACACAAGGCAGAGGACCAGATCAGCCTGGTCGGCTTTCCGAGTGCCAGGGTATGGGGTGGTACCTAGAAGAAGCAAACCTAGCACAGGTGTCTTTAAACCTACTGGATTATCACCAAGCTGGCATGCATACAGCTTTTGAAGAGTGCATGAAAGATGTAAAGGAATTAAAGCTCGCAGTTTGTGGATCACAGATTGTCGGTCTGGTTCCTCTGGAAGCAATGTTGTTAGCTGCTGACTACTACATTAAGAAAGAAGACCTGTTTATTGTCGGGGAAGATCAAAAGATCCGTTTGGTTATAGAGAGGTTAGGACTGAGCTCAATCACTCCATTTGATCCTAAAACAAGGATTATCGAATACCTAGTTGACAGTGTCGAGGATGGTCCCCTTGTATCCATGCCTTTCCGACAGTTTATCTACAGTCTAGGGTCCAGATCATCGGCTCCTGGAGGGGGATCTGCTTCCGCTGCTATAGGAGCCATGGGGGTTGCCCTTGCAGCCATGGTTGGTTGGCTTACGTACGGGAACAAGAAGTTCGAGGCGCTCGATTCACAGATGCGGAAACTTATTCCACCTCTGAGACAAGCCATGTTGGATTTTATACCAATGGTTGATGCAGACACTAACGCGTTCAGCGGATTCATGGAAGCCAAGAAACTTCCTATAACTACACCCAAAGAACAACAGATTCGTGAGAAGGCTTTACAAGAAAGTCTGAAGTCTGCTGTCCAGGTCCCGCTCAACGTTATTAAAACAGCTGCCAAGGCGTGGGACCCGATGGTAGAGCTTGCCAAGATTGGAAACATAAACAGCAAATCCGATCTGCAGGTTGGCGCGCGCAGTCTGGAGACGGCTGTTTGGGGCGCTTTTTACAACGTGAAGATCAACCTTCCAGACATAACTGACGAGGCGTATAAGAAACAGGTTCTTGACGAAGCGGAGTCGTCTTTGGAAAAAGCGCaagaaaaatgcaaagaaatcctAAACATATTGGAGAAAAGGAATTAAGAACTCACGTAGCTCCTTTAAACGGATGAAGAAGCGAATGTAGATACATTTAGAAGTGTGTTTACTTAATGATAATGACAGGGCTGCTGACAACCCTCATTGTGAATGAGTGATGTTGAGGGACTCATCTTCCCTGAAACAGGTTCTTAAACAGCAGCTCCCTTCCTAGTCGGTCCAATTCACACACAAttgccacaggtcaggaaatGGTCAGGGAAAGAATTCCCCAAAATCAGGGAAAAGTCGGAGAATTTAAGTTGATcttacattttgtatttatttcttGTATAACTATTTATTTGGGcagaaaatttgatttttatcaGAAAAAAGTCAGGAAAAATTTTGTGAGGCCAGTGACAACCATTCCACGTTTGGTAATGTTTATCGTAATACTAGCTGTTTGAAGTGAAAGTACAATTTTACGAACTAAGTTAAGTATGAAGCTTACATTGGTTTGCTCGCTAGCGAGGCGGTAGTGCGGTTGAATGGCCCAGATTTGCTCAAAGCTTTAAGCTTTCATTTTGAAGTAGACATGGGGAAAATCATTGCTCTGGCTGGTGTGATTTTCCATAATTATACTCCGCCATTTCTCTGGAAGTTGATGATGCCATAAAGTTAAGTGTGTGAAGAGAAGTCATCGTAAATTCAATCACCGCTTGTGTCAGTGTGTGTCGAGTGTCAGTGTGATGTAGTAGAGTAGTTGGTAACACAATATACCTATCTTCCGAAGGTACGCGCTTGTGTAACCTTATGCGTTTTGTCAAATGGGTGTGAATTCACTGTTGGGCCAACGCACTTTCGCATAAGGGCTGGAAGGCTGTTGGGCGTGGTTCACATGAGTGCTCCTTCGTTGATAGGGTACTGGATTTTATTGGCAGAGACAGTGTAAAGAGTTCTTCCATAGCATATGCAATGGGTGAATAATATCTGCGAGAGACTAGTAGAGTTAAACTAAGAATATCGAGTTTTTAAAATTGTTGGGCTTTTTTTACGGTT

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95954	Formimidoyltransferase-cyclodeaminase OS=Homo sapiens OX=9606 GN=FTCD PE=1 SV=2
Q91XD4	Formimidoyltransferase-cyclodeaminase OS=Mus musculus OX=10090 GN=Ftcd PE=1 SV=1
P53603	Formimidoyltransferase-cyclodeaminase OS=Sus scrofa OX=9823 GN=FTCD PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005811 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02971 all species →	FTCD	Formiminotransferase domain	Domain	Interproscan
PF04961 all species →	FTCD_C	Formiminotransferase-cyclodeaminase	Family	Interproscan
PF07837 all species →	FTCD_N	Formiminotransferase domain, N-terminal subdomain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012886 all species →	Domain	Formiminotransferase, N-terminal subdomain	Interproscan
IPR013802 all species →	Domain	Formiminotransferase, C-terminal subdomain	Interproscan
IPR036178 all species →	Homologous_superfamily	Formimidoyltransferase-cyclodeaminase-like superfamily	Interproscan
IPR037064 all species →	Homologous_superfamily	Formiminotransferase, N-terminal subdomain superfamily	Interproscan
IPR007044 all species →	Domain	Cyclodeaminase/cyclohydrolase	Interproscan
IPR004227 all species →	Domain	Formiminotransferase catalytic domain	Interproscan
IPR051623 all species →	Family	Formiminotransferase-cyclodeaminase	Interproscan
IPR022384 all species →	Homologous_superfamily	Formiminotransferase catalytic domain superfamily	Interproscan
IPR037070 all species →	Homologous_superfamily	Formiminotransferase, C-terminal subdomain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12234 all species →	FORMIMINOTRANSFERASE-CYCLODEAMINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005542 all species →	Molecular Function	folic acid binding	Interproscan
GO:0016740 all species →	Molecular Function	transferase activity	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0044237 all species →	Biological Process	obsolete cellular metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K13990	FTCD; glutamate formiminotransferase / formiminotetrahydrofolate cyclodeaminase	EC:2.1.2.5 EC:4.3.1.4	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Co-expression network

Genes whose expression across the transcriptome samples of Catalaphyllia jardinei tracks this one. Counts are over the whole network; the network view itself draws at most 100 partners per query gene (CNIDO_NET_TOP_K), so a hub gene can show fewer edges than the number below.

No co-expression network has been built for this species, so this gene has no partners to show. Networks are available for the species listed on the Network Analysis page.

Single-cell expression

Whether this gene can be visualised in the single-cell atlases of Catalaphyllia jardinei, and in which cell types it is a marker. Expression is stored per cell, so the violin plot and the cell-type means are computed in the viewer — open a dataset to see them.

No single-cell dataset has been published for this species. The atlases that do exist are listed in the Cell Atlas.

Epigenetic marks

Chromatin and DNA-methylation data covering this gene. Peak calls are listed per sample with the genomic region the peak falls in; DNA methylation is listed as sample availability only, because those tables are queried by the DNA Methylation page itself.

No epigenomic data has been deposited for this species. The assays that exist across the site are described in the Epigenomic Data module.

What you can do with this gene

Every tool below opens with this gene already entered, so you land on the analysis rather than on an empty form. Links open in a new tab.

Analysis	What it does	Status
Primer design	Design PCR / qPCR primers on this gene’s sequence with the published primer3 settings. Opens with the primers already computed.	template found	open →
BLAST	Search this gene’s sequence against the CnidoSite BLAST databases. The query is filled in and the species’ database is preselected — press Run to start.	template found	open →
Expression heatmap	Draw this gene’s expression as a heatmap across all RNA-seq samples, and compare it with the genes you add next to it.	no expression matrix	–
Gene family / orthogroup	Look this gene up in the single-copy orthogroups built from the high-quality cnidarian genomes, and see which other species carry an orthologue.		open →
Gene set analysis	Start a gene-set enrichment analysis with this gene as the seed list. Add more genes on that page before running it.		open →